View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8862_high_1 (Length: 499)

Name: NF8862_high_1
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8862_high_1
NF8862_high_1
[»] chr2 (9 HSPs)
chr2 (25-313)||(23175455-23175754)
chr2 (25-313)||(23586712-23587011)
chr2 (18-279)||(23181497-23181771)
chr2 (18-279)||(23592754-23593028)
chr2 (358-486)||(23175184-23175315)
chr2 (358-486)||(23586441-23586572)
chr2 (358-429)||(23386989-23387061)
chr2 (358-421)||(30874695-30874759)
chr2 (363-406)||(30875268-30875311)
[»] chr8 (5 HSPs)
chr8 (358-486)||(34347801-34347930)
chr8 (379-467)||(34348390-34348479)
chr8 (358-406)||(23813398-23813446)
chr8 (358-406)||(28930925-28930973)
chr8 (358-406)||(28931494-28931542)
[»] chr7 (2 HSPs)
chr7 (358-461)||(48625062-48625166)
chr7 (363-471)||(48625684-48625793)
[»] chr5 (3 HSPs)
chr5 (386-484)||(6759678-6759777)
chr5 (377-467)||(6759127-6759218)
chr5 (358-406)||(31658207-31658255)
[»] chr4 (2 HSPs)
chr4 (370-449)||(50465060-50465141)
chr4 (365-421)||(54009731-54009788)
[»] chr3 (1 HSPs)
chr3 (358-407)||(35650823-35650872)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 23175754 - 23175455
Alignment:
Q  25 tatttaagagataggtttggatccgacattttgtttaccttgaatagatataacaaactagaacaacattgcaaaattattatttatattttgttattag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  23175754 tatttaagagataggtttggatccgacattttgtttaccttgaatagatataaaaaactagaacaacattgcaaaattattatttatattttgttattgt 23175655  T
Q  125 tcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23175654 tcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttg 23175555  T
Q  225 tgt-----------tggtttgagactatggactgtgttcttctttaaggactcaagtacaattattcttgatgctaatttgaatgaactagtttggccgt 313  Q
    |||           |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||| |||||    
T  23175554 tgttggtgtgatgttggtttcagactatggagtgtgttcttttttaaggactcaagtacaattattcttgatgccaatttgaatagactagtttagccgt 23175455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 25 - 313
Target Start/End: Complemental strand, 23587011 - 23586712
Alignment:
Q  25 tatttaagagataggtttggatccgacattttgtttaccttgaatagatataacaaactagaacaacattgcaaaattattatttatattttgttattag 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
T  23587011 tatttaagagataggtttggatccgacattttgtttaccttgaatagatataaaaaactagaacaacattgcaaaattattatttatattttgttattgt 23586912  T
Q  125 tcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586911 tcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaacccacttg 23586812  T
Q  225 tgt-----------tggtttgagactatggactgtgttcttctttaaggactcaagtacaattattcttgatgctaatttgaatgaactagtttggccgt 313  Q
    |||           |||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||| |||||    
T  23586811 tgttggtgtgatgttggtttcagactatggagtgtgttcttttttaaggactcaagtacaattattcttgatgccaatttgaatagactagtttagccgt 23586712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 23181771 - 23181497
Alignment:
Q  18 tttagtgtatttaagagataggtttggatccgacattttgtttaccttgaatagatataacaaactagaacaacattgcaaaattattatttatattttg 117  Q
    |||||||||||||||||| | |||||| |||||  |||||||||||||||| |||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  23181771 tttagtgtatttaagagacaagtttgggtccgatgttttgtttaccttgaaaagatatgaaaaactagaacgacattacaaaattattatttatattttg 23181672  T
Q  118 ttattagtcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaac 217  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| |||  ||||||| ||||||||    ||||||||||||||||||||     
T  23181671 ttattggtcgataatactcaaataaatgcacatgcggggagaaggaatggtgacccacaattagttttcctttaatttttttaacaacctatatataaat 23181572  T
Q  218 ccacttg-------------tgttggtttgagactatggactgtgttcttctttaaggactcaagtacaattatt 279  Q
      |||||             |||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||    
T  23181571 taacttggattggtctgtgatgttggtttgagactatggaatgtgttcttctttaaggtctcaagttcgattatt 23181497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 23593028 - 23592754
Alignment:
Q  18 tttagtgtatttaagagataggtttggatccgacattttgtttaccttgaatagatataacaaactagaacaacattgcaaaattattatttatattttg 117  Q
    |||||||||||||||||| | |||||| |||||  |||||||||||||||| |||||| | |||||||||| ||||| ||||||||||||||||||||||    
T  23593028 tttagtgtatttaagagacaagtttgggtccgatgttttgtttaccttgaaaagatatgaaaaactagaacgacattacaaaattattatttatattttg 23592929  T
Q  118 ttattagtcaataatactcaaataaatgcacatgcggagagaatgaatggtgagccatgattagttctcctttaaaaaatttaacaacctatatataaac 217  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| |||  ||||||| ||||||||    ||||||||||||||||||||     
T  23592928 ttattggtcgataatactcaaataaatgcacatgcggggagaaggaatggtgacccacaattagttttcctttaatttttttaacaacctatatataaat 23592829  T
Q  218 ccacttg-------------tgttggtttgagactatggactgtgttcttctttaaggactcaagtacaattatt 279  Q
      |||||             |||||||||||||||||||| ||||||||||||||||| ||||||| | ||||||    
T  23592828 taacttggattggtctgtgatgttggtttgagactatggaatgtgttcttctttaaggtctcaagttcgattatt 23592754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 23175315 - 23175184
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaag 456  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  23175315 gcatatcaagtgagaatggatatgttatgtgagaatgataggaataattgtcggcccttagattagtttggatggtggagattaaaaactttaatttaag 23175216  T
Q  457 gaacacgtgtg--tatcctctcgtagtattat 486  Q
    |||||||||||  |||||||||||||||||||    
T  23175215 gaacacgtgtgtatatcctctcgtagtattat 23175184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 358 - 486
Target Start/End: Complemental strand, 23586572 - 23586441
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaag 456  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| ||||||    
T  23586572 gcatatcaagtgagaatggatatgttatgtgagaatgataggaataattgtcggcccttagattagtttggatggtggagattaaaaactttaatttaag 23586473  T
Q  457 gaacacgtgtg--tatcctctcgtagtattat 486  Q
    |||||||||||  |||||||||||||||||||    
T  23586472 gaacacgtgtgtatatcctctcgtagtattat 23586441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 429
Target Start/End: Original strand, 23386989 - 23387061
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggat 429  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  23386989 gcatatcaagtgagaatggatatgttatgtgagaatgataggaataattgtcagcccttagattagtttggat 23387061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 30874695 - 30874759
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagatta 421  Q
    |||| ||||||||||||||||| || |||||||||||||| |||||||| |||||| ||||||||    
T  30874695 gcatatcaagtgagaatggataagttatgtgagaatgataagaataattatcaacctttagatta 30874759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 30875311 - 30875268
Alignment:
Q  363 tcaagtgagaatggatatgtcatgtgagaatgataggaataatt 406  Q
    |||| |||||||||||| || |||||||||||||||||||||||    
T  30875311 tcaattgagaatggataagttatgtgagaatgataggaataatt 30875268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 358 - 486
Target Start/End: Original strand, 34347801 - 34347930
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaag 456  Q
    |||| |||||||||||||||||||| |||||||||||||| |||| ||| ||| |||||||||||||||||| |||||||||||||||||||| ||||||    
T  34347801 gcatatcaagtgagaatggatatgttatgtgagaatgatatgaattattgtcagcccttagattagtttggacggtggagattaaaaactttaatttaag 34347900  T
Q  457 gaacacgtgtgtatcctctcgtagtattat 486  Q
    |||||| ||||||||||||| | |||||||    
T  34347901 gaacacatgtgtatcctctcatggtattat 34347930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 467
Target Start/End: Complemental strand, 34348479 - 34348390
Alignment:
Q  379 atgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaaggaacacgtgtg 467  Q
    |||| |||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |||||  |||| || ||||||||    
T  34348479 atgttatgtgagaatgataagaataattgtcgacccttagattagtttggatggtggagattaaaatctttaacttaaagagcacgtgtg 34348390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 23813398 - 23813446
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt 406  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||    
T  23813398 gcatatcaagttagaatggataagttatgtgagaatgataggaataatt 23813446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 28930925 - 28930973
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt 406  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||||    
T  28930925 gcatatcaagtgagaatggataaattatgtgagaatgataggaataatt 28930973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 28931542 - 28931494
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt 406  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||||    
T  28931542 gcatatcaagtgagaatggataaattatgtgagaatgataggaataatt 28931494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 358 - 461
Target Start/End: Original strand, 48625062 - 48625166
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaag 456  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  48625062 gcatatcaagtgagaatggatatgttatgtgagaatgataggaataattgtcagcccttagattagtttggatggtggagattaaaaactttaatttaag 48625161  T
Q  457 gaaca 461  Q
    |||||    
T  48625162 gaaca 48625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 363 - 471
Target Start/End: Complemental strand, 48625793 - 48625684
Alignment:
Q  363 tcaagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaaggaaca 461  Q
    |||||||||||||||||||| |||||| |||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||||| ||||| || ||    
T  48625793 tcaagtgagaatggatatgttatgtgaaaatgataggaataattgtcggcccttagattagtttggatggtggagattaaaatctttaatttaaagagca 48625694  T
Q  462 cgtgtgtatc 471  Q
    ||||||||||    
T  48625693 cgtgtgtatc 48625684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 386 - 484
Target Start/End: Complemental strand, 6759777 - 6759678
Alignment:
Q  386 gtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaaggaacacgtgtgtatcctctcgtagtatt 484  Q
    ||||||||||||||||||||| |||  | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  6759777 gtgagaatgataggaataattatcagtctttagattagtttggatggtggagattaaaaactttaatttaaggaacacttgtgtatcctctcatagtatt 6759678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 377 - 467
Target Start/End: Original strand, 6759127 - 6759218
Alignment:
Q  377 atatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttggatggtggagattaaaaactttattttaaggaacacgtgtg 467  Q
    |||||| |||||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  6759127 atatgttatgtgagaatgataagaataattgtcggcccttagattagtttggatggtggagattaaaatctttaatttaaagagcacgtgtg 6759218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 406
Target Start/End: Original strand, 31658207 - 31658255
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataatt 406  Q
    |||| |||||||||||||||||||| |||||||||||||| ||||||||    
T  31658207 gcatatcaagtgagaatggatatgttatgtgagaatgataagaataatt 31658255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 370 - 449
Target Start/End: Complemental strand, 50465141 - 50465060
Alignment:
Q  370 agaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagattagtttg-gatggtggagattaaaaacttta 449  Q
    ||||||||||  | |||||||||||||| |||| ||| |||||||| ||||| ||||  |||||||||||||||||||||||    
T  50465141 agaatggataacttatgtgagaatgataagaatcattgtcaaccctaagattggttttagatggtggagattaaaaacttta 50465060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 421
Target Start/End: Complemental strand, 54009788 - 54009731
Alignment:
Q  365 aagtgagaatggatatgtcatgtgagaatgataggaataatt-tcaacccttagatta 421  Q
    ||||||||||| ||| || ||||||||||||||||||||||| |||||| ||||||||    
T  54009788 aagtgagaatgaataagttatgtgagaatgataggaataattatcaacctttagatta 54009731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 35650823 - 35650872
Alignment:
Q  358 gcatgtcaagtgagaatggatatgtcatgtgagaatgataggaataattt 407  Q
    |||| ||||||||||||||| || | ||||||||||||||||||| ||||    
T  35650823 gcatatcaagtgagaatggacatcttatgtgagaatgataggaatgattt 35650872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University