View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8862_high_2 (Length: 471)
Name: NF8862_high_2
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8862_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 35695449 - 35694978
Alignment:
| Q |
1 |
ggactattgttgagacactgtcaacttacttgtagaaccgacactgcatgcgctgatggctaaatgtaaacacacgccgtaatttgatacaaaatcacaa |
100 |
Q |
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| T |
35695449 |
ggactattgttgagacactgtcaacttacttgtagaaccgacactgcatgcattgatggctaaatgtaaacacacgccgtaatttgatacaaaatcacaa |
35695350 |
T |
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| Q |
101 |
agactagtatcatggggataaaaaggttaggctttctgttt-aagaaatagacacgcactcttcttaatttggaaatgtactaggatagtgcattaggtt |
199 |
Q |
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| T |
35695349 |
agactagtatcatggggataaaaaggttagactttctgttttaagaaatagacacgcactcttcttaatttggaaatgtactaggatagtgtattaggtt |
35695250 |
T |
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| Q |
200 |
agttatggcagcacagtacaagaccaaaatatgaagtcataaacataaaacaccaatacaaaacagaagtatagtcatcaagcaaatacctttcctgaat |
299 |
Q |
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| T |
35695249 |
atttatggcagcacagtacaagaccaaaatatgaagtcataaacataaaacaccaatacaaaacagaagtatagtcatcaagcaaatacctttcctgaat |
35695150 |
T |
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| Q |
300 |
ctccagccaaactggatttcagaagtagtgttcgatatttcctgcaggaacaaacaatcaatactgtaaacaaataatcaattaaaatcaccatagttac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35695149 |
ctccagccaaactggatttcagaagtagtgttcgatatttcctgcaggaacaaacaatcaatactgtaaacaaataatcaattaaaatcaccatagttac |
35695050 |
T |
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| Q |
400 |
tagttagagcaaaatccgacgcgtattattgtcacacaggagaagcaaagacaatgaaaagtatgcaatacc |
471 |
Q |
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| T |
35695049 |
tagttagagcaaaatctgacgcggattattgtcacacaggagaagcaaagacaatgaaaagtatgtaatacc |
35694978 |
T |
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