View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8862_high_4 (Length: 432)
Name: NF8862_high_4
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8862_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7285184 - 7284993
Alignment:
| Q |
1 |
agttatgtggtctcaatggccacatgaagcacatcaatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7285184 |
agttatgtggtctcaatggccacatgaagcacatcaatgatggccttaaaatcaattctctaggtatttgttttctacatttcttcatcttcaagattct |
7285085 |
T |
|
| Q |
101 |
agcttttaatgggttataactcgcaagttaaattgtgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaaccctt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7285084 |
agcttttaatgggttataactcgcaagttaaattgtgaagatgagtttccatgttgaagtggaggaagccgtaattagagacataaagcctt |
7284993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 189 - 415
Target Start/End: Complemental strand, 7284944 - 7284718
Alignment:
| Q |
189 |
ccttaattattctttatttagcacttcaaatttttgcataggctcattggttatgtaacattggcaggctaaacctcatgcaaccgcagaagctttgatc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7284944 |
ccttaattattctttatttagcacttcaaatttccgcataggctcattggttatgtaacattggcaggctaaacctcatgcaaccgcagaagctttgatc |
7284845 |
T |
|
| Q |
289 |
aaaggttttcctatgaaccttaatgactgtatttttgatcgcgcgagtggttaaattattcttctcaataccattcaannnnnnnnnnnnnnattgcacc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7284844 |
aaaggttttcctatgaaccttaatgactgtatttttgatcgcgcgagtagttaaattattcttctcaataccattcaattttttgtttttttattgcacc |
7284745 |
T |
|
| Q |
389 |
tcattttgatccaagctgcaatagtga |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7284744 |
tcattttgatccaagctgcaatagtga |
7284718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 319 - 415
Target Start/End: Complemental strand, 7281919 - 7281823
Alignment:
| Q |
319 |
atttttgatcgcgcgagtggttaaattattcttctcaataccattcaannnnnnnnnnnnnnattgcacctcattttgatccaagctgcaatagtga |
415 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7281919 |
atttgtgatcgcgcgagtagttaaattcttcttctcaataccattcaattttttgtttttttattgcacctcattttgatccaagctgcaatagtga |
7281823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 16861875 - 16861945
Alignment:
| Q |
295 |
tttcctatgaaccttaatgactgtatttttgatcgcgcgagtggttaaattattcttctcaataccattca |
365 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| | | |||| ||||||| ||||||||||||||||||| |
|
|
| T |
16861875 |
tttcctatgaacctcaatgactatatttttgagcatgtgagtaattaaattgttcttctcaataccattca |
16861945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University