View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8862_high_6 (Length: 380)

Name: NF8862_high_6
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8862_high_6
NF8862_high_6
[»] chr2 (3 HSPs)
chr2 (178-380)||(10446627-10446831)
chr2 (292-380)||(19348075-19348163)
chr2 (326-380)||(25402481-25402535)
[»] chr7 (9 HSPs)
chr7 (292-378)||(21987717-21987803)
chr7 (293-380)||(49090487-49090574)
chr7 (292-380)||(9186347-9186435)
chr7 (292-380)||(18412455-18412543)
chr7 (292-380)||(21644834-21644922)
chr7 (292-367)||(5818400-5818475)
chr7 (292-380)||(16883724-16883812)
chr7 (292-380)||(24262525-24262613)
chr7 (309-380)||(12405151-12405222)
[»] scaffold0006 (1 HSPs)
scaffold0006 (292-380)||(1304-1392)
[»] chr8 (6 HSPs)
chr8 (292-380)||(23800720-23800808)
chr8 (292-379)||(26300147-26300234)
chr8 (292-380)||(18856477-18856565)
chr8 (292-380)||(18866872-18866960)
chr8 (292-380)||(10685466-10685554)
chr8 (292-380)||(35744186-35744275)
[»] chr4 (3 HSPs)
chr4 (292-380)||(16625195-16625283)
chr4 (292-380)||(9225606-9225694)
chr4 (292-378)||(5146701-5146784)
[»] scaffold0842 (1 HSPs)
scaffold0842 (292-380)||(4396-4484)
[»] chr5 (9 HSPs)
chr5 (292-380)||(27448619-27448707)
chr5 (292-380)||(33790112-33790200)
chr5 (292-380)||(43595918-43596006)
chr5 (292-380)||(43628712-43628800)
chr5 (292-379)||(24556787-24556874)
chr5 (292-379)||(24597819-24597906)
chr5 (292-380)||(31398194-31398282)
chr5 (292-380)||(37557826-37557914)
chr5 (292-350)||(28837089-28837147)
[»] scaffold0078 (1 HSPs)
scaffold0078 (293-380)||(35808-35895)
[»] chr3 (7 HSPs)
chr3 (293-380)||(3324738-3324825)
chr3 (292-380)||(16263159-16263247)
chr3 (292-380)||(28490375-28490463)
chr3 (292-380)||(2673422-2673510)
chr3 (292-380)||(8515891-8515979)
chr3 (292-380)||(9603049-9603137)
chr3 (292-380)||(32479137-32479225)
[»] chr1 (5 HSPs)
chr1 (292-378)||(47100022-47100108)
chr1 (292-380)||(19360040-19360128)
chr1 (292-380)||(41397036-41397124)
chr1 (297-372)||(9025008-9025084)
chr1 (342-380)||(17346715-17346753)
[»] scaffold0197 (1 HSPs)
scaffold0197 (292-380)||(15511-15599)
[»] chr6 (5 HSPs)
chr6 (292-380)||(14738774-14738862)
chr6 (292-380)||(24432523-24432611)
chr6 (292-380)||(33332278-33332366)
chr6 (314-380)||(29485393-29485459)
chr6 (292-375)||(24077727-24077810)
[»] scaffold0028 (1 HSPs)
scaffold0028 (292-380)||(150157-150245)
[»] scaffold0188 (1 HSPs)
scaffold0188 (331-380)||(19141-19190)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 178 - 380
Target Start/End: Complemental strand, 10446831 - 10446627
Alignment:
Q  178 atcttttttcaaacttttgggttccaaatatggggactttcaggattttgataaagacattgt--tggcttcaagactggattttgctagaatcctggtg 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||| |||    
T  10446831 atcttttttcaaacttttgggttccaaatatggggactttcaggattttgatgaagacactgtgttggcttcaagactggattttgctagaatcctagtg 10446732  T
Q  276 tcttcataaagaaccggttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagca 375  Q
    ||||||| |||||  ||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  10446731 tcttcatcaagaatgggttatttccgagtcgaacaactcctctttcttttagagccaaagtatcaaaatattccttcctgggacacatgtgataagagca 10446632  T
Q  376 tcccg 380  Q
    |||||    
T  10446631 tcccg 10446627  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 19348075 - 19348163
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  19348075 gttatttctgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 19348163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 380
Target Start/End: Original strand, 25402481 - 25402535
Alignment:
Q  326 agagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||| |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  25402481 agagtcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 25402535  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 21987717 - 21987803
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcc 378  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  21987717 gttatttccgagtcgaacaactcctccttcttttagagccaaagtctcaaaatattccttcctaggacacatgtgataagagcatcc 21987803  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 49090487 - 49090574
Alignment:
Q  293 ttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  49090487 ttatttccgagtcgagcaactcctccttcttttagagccaaagtctcaaaatattccttcctaagacacatgtgatcagagcatcccg 49090574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 9186435 - 9186347
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||    
T  9186435 gttatttccgagtcaaacaactcctccttcttttagagccaaagtctcaaaatatttctttctaggacacatgtgataagagcatcccg 9186347  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 18412455 - 18412543
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  18412455 gttatttccgagtcgaacaactcctccttcttttagagtcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 18412543  T

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Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 21644834 - 21644922
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||| |||||||||||||    
T  21644834 gttatttccgagtcgaacaactcctccttcttttagagtcaaagtctcaaaatattcctttctaggacacatgtggtaagagcatcccg 21644922  T

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Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 367
Target Start/End: Complemental strand, 5818475 - 5818400
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtga 367  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||    
T  5818475 gttatttccgagtcgaacaactcctccttcttttagagccaaagtctcaaaatatttcttcctaggacacatgtga 5818400  T

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Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 16883724 - 16883812
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  16883724 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 16883812  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 24262613 - 24262525
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  24262613 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 24262525  T

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Target: chr7; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 380
Target Start/End: Original strand, 12405151 - 12405222
Alignment:
Q  309 caactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  12405151 caactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 12405222  T

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Target: scaffold0006 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 1304 - 1392
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1304 gttatttccgagtcgagctactcctccttcttttagagccaaagtctcaaaatattcatttctaagacacatgtgataagagcatcccg 1392  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 23800808 - 23800720
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23800808 gttatttccgagtcgaacaactcttccttcttttagaaccaaagtctcaaaatattccttcctaagacacatgtgataagagcatcccg 23800720  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 379
Target Start/End: Original strand, 26300147 - 26300234
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatccc 379  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||    
T  26300147 gttatttccgagtcgaacaactcctccttcttttagagtcaaagtctcaaaatattcctttctatgacacatgtgataagagcatccc 26300234  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 18856565 - 18856477
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  18856565 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 18856477  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 18866960 - 18866872
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  18866960 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 18866872  T

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Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 10685554 - 10685466
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  10685554 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 10685466  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 35744186 - 35744275
Alignment:
Q  292 gttatttccgagtctaacaactcct-ccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| |||||||||| ||||||||||||  |||||||||||||||||| || ||| ||||||||||||| ||||||||||    
T  35744186 gttatttccgagtcgaacaactccttccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgatatgagcatcccg 35744275  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 16625283 - 16625195
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  16625283 gttatttccgattcgaacaactcctccttcttttagagccaaagtctcaaaatattccttcctaggacacatgtgataagagcatcccg 16625195  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 9225694 - 9225606
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  9225694 gttatttccgagtcaaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 9225606  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 5146701 - 5146784
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcc 378  Q
    |||||||||||||| ||||||||||||||  ||||||||||||   ||||||||||| |||||| |||||||| |||||||||||||    
T  5146701 gttatttccgagtcgaacaactcctccttaatttagagccaaa---tcaaaatattccttcctaggacacatgcgataagagcatcc 5146784  T

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Target: scaffold0842 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 4484 - 4396
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  4484 gttatttccgagtcgaacaactcctccttcttttaaagccaaagtctcaaaatatttcttcctaggacacatgtgataagagcatcccg 4396  T

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Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 27448619 - 27448707
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  27448619 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcatttctaggacacatgtgataagagcatcccg 27448707  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 33790112 - 33790200
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  33790112 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 33790200  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 43595918 - 43596006
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  43595918 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 43596006  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 43628712 - 43628800
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  43628712 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 43628800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 24556874 - 24556787
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatccc 379  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||| ||||||    
T  24556874 gttatttccgagtcgaacaactcctccttcttttagagccaaagtctcaaaatattcctttgtaggatacatgtgataagatcatccc 24556787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 292 - 379
Target Start/End: Complemental strand, 24597906 - 24597819
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatccc 379  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  || || ||||||||||||| ||||||    
T  24597906 gttatttccgagtcgaacaactcctccttcttttagagccaaagtctcaaaatattcctttgtaggatacatgtgataagatcatccc 24597819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 31398282 - 31398194
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||| || ||| | | ||||||||||||||||||||    
T  31398282 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatgttcctttctagggctcatgtgataagagcatcccg 31398194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 37557914 - 37557826
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||  | ||| ||  ||||||||||||||||||||    
T  37557914 gttatttccgagtcgaacaattcctccttcttttagaatcaaagtctcaaaatattccattctaggaatcatgtgataagagcatcccg 37557826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 292 - 350
Target Start/End: Original strand, 28837089 - 28837147
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcat 350  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||    
T  28837089 gttatttccaagtcgaacaactcctccttcttttaaagccaaagtctcaaaatattcat 28837147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 380
Target Start/End: Original strand, 35808 - 35895
Alignment:
Q  293 ttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||| ||||    
T  35808 ttatttccgagtcgaacaactcctccttcttttagagccaaattctcaaaatattccttcataagacacatgtgataagagcaccccg 35895  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 3324825 - 3324738
Alignment:
Q  293 ttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||    
T  3324825 ttatttccgagtcaaacaactcctccttcttttagagccaaagtatcaaaatattccttcctaggacacatgtaataagagcatcccg 3324738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 16263159 - 16263247
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  16263159 gttatttctgagtcgaacaactcctccttattttagagccaaagtctcaaaatatttcttcctaggacacatgtgataagagcatcccg 16263247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 28490463 - 28490375
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  28490463 gttatttccaagtcgaacaactcctccttctttaagaatcaaagtctcaaaatattcatttctaggacacatgtgataagagcatcccg 28490375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 2673510 - 2673422
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  2673510 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 2673422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 8515891 - 8515979
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  8515891 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 8515979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 9603137 - 9603049
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||| ||||| ||||||| |||||||| ||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||    
T  9603137 gttatttctgagtcgaacaacttctccttctcttagagccaaagtctcaaaatattcctttctaggacacatatgataagagcatcccg 9603049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 32479137 - 32479225
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  32479137 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 32479225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 292 - 378
Target Start/End: Complemental strand, 47100108 - 47100022
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcc 378  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||    
T  47100108 gttattttcgagtcaaacaactcctccttcttttagagccaaagtctcaaaatatttcttcctatgacacatgtgataagagcatcc 47100022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 19360128 - 19360040
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| || ||| ||||||||||||||||||||||||    
T  19360128 gttatttccgagtcgaacaactcctccttcttttagagtcaaagcctcaaaatattcctttctaggacacatgtgataagagcatcccg 19360040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 41397036 - 41397124
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  41397036 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 41397124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 9025084 - 9025008
Alignment:
Q  297 ttccgagtctaacaactcctccttcttttagagcc-aaagtctcaaaatattcattcctaagacacatgtgataaga 372  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| ||||||||| || ||| ||||||||||||||||    
T  9025084 ttccgagtcgaacaactccttcttcttttagagccaaaagtcttaaaatattcctttctaggacacatgtgataaga 9025008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 17346753 - 17346715
Alignment:
Q  342 aatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  17346753 aatattcattcctaggacacatgtgataagagcaccccg 17346715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 15599 - 15511
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  15599 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 15511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 14738862 - 14738774
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  14738862 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 14738774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 24432611 - 24432523
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||| |||| | |||||||||||||||||    
T  24432611 gttatttccgagtcgaacaactcctcattcttttagagccaaagtctcaaaatattcctttctatgacatacgtgataagagcatcccg 24432523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 33332366 - 33332278
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  33332366 gttatttctgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 33332278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 380
Target Start/End: Original strand, 29485393 - 29485459
Alignment:
Q  314 cctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    ||||||||||||||| |||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  29485393 cctccttcttttagaaccaaagtcccaaaatattccttcctaggacacatgtgataagagcatcccg 29485459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 292 - 375
Target Start/End: Original strand, 24077727 - 24077810
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagca 375  Q
    |||||||  ||||| ||||||||| |||||||||||| ||||||||||||||||||| || |  | | ||||||||||||||||    
T  24077727 gttatttttgagtcgaacaactccaccttcttttagatccaaagtctcaaaatattcctttcccaaaaacatgtgataagagca 24077810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 150245 - 150157
Alignment:
Q  292 gttatttccgagtctaacaactcctccttcttttagagccaaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||| ||||||||||||||||||||||  |||||||||||||||||| || ||| | | ||||||||||||||||||||    
T  150245 gttatttccgagtcgaacaactcctccttcttttagaatcaaagtctcaaaatattcctttctagggctcatgtgataagagcatcccg 150157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 380
Target Start/End: Complemental strand, 19190 - 19141
Alignment:
Q  331 caaagtctcaaaatattcattcctaagacacatgtgataagagcatcccg 380  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||    
T  19190 caaagtctcaaaatattcctttctaggacacatgtgataagagcatcccg 19141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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