View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8862_low_14 (Length: 274)
Name: NF8862_low_14
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8862_low_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 29245554 - 29245295
Alignment:
| Q |
19 |
agggatttggtaccttagtaagtaaaaactataagtatat----ttgagggacaatgagtgagaaatttttaatcttttcctaactgagttattttggga |
114 |
Q |
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| T |
29245554 |
agggatttggtaccttagtaagtaaaaactataagtatatatatttgagggacaatgagtgagaaatttttaatcttttcctaactgagttgttttggga |
29245455 |
T |
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| Q |
115 |
ttcaatgaagcaatctagttgnnnnnnntggtatgtgtatattaagattccacgttagtatttatattgcattgcacaaagacctgcatgctgaaaggaa |
214 |
Q |
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| T |
29245454 |
ttcaatgaagcaatctagttgaaaaaaatggtatgtgtatattaagattccacgttagtatttatattgcattgcacaaagacctgcctgctgaaaggaa |
29245355 |
T |
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| Q |
215 |
catttatcacttcaaggaccaacttatatgaagtataaacatgcactttcaaacaccaaa |
274 |
Q |
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| T |
29245354 |
catttatcacttcaaggaccaacttatatgaagtataaacatgcactttcaaacaccaaa |
29245295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 29268513 - 29268423
Alignment:
| Q |
19 |
agggatttggtaccttagtaagtaaaaactataagtatat----ttgagggacaatgagtgagaaatttttaatcttttcctaactgagtt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29268513 |
agggatttggtaccttagtaagtaaaaactataagtatatatatttgagggacaatgagtgagaaatttttaatcttttcctaactgagtt |
29268423 |
T |
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