View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8862_low_15 (Length: 240)
Name: NF8862_low_15
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8862_low_15 |
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| [»] scaffold1983 (1 HSPs) |
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| [»] scaffold0927 (1 HSPs) |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 28564704 - 28564927
Alignment:
| Q |
1 |
tgcttctaatacatgagcaaacatcctataaaagcttggtttcatgaatagatactgttgtaaactcaaaaacattatagaatgatatataataaactat |
100 |
Q |
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| T |
28564704 |
tgcttctaatacatgagcaaacatcctataaaagcttggtttcatgaatagatactgttgtaaactcaaaaacattatagaatgatagataataaacttt |
28564803 |
T |
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| Q |
101 |
tatgctttcttgtatagatacatgagcatgcatcctataaaagcttggtatattttcttgtgcttcacctgaaagttatggatttgccaagaaccttgac |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
28564804 |
tatgctttcttgtatagatacatgagtatgcatcctataaaagcttggtatattttcttgtgcttcacctg-aagttatggatttgctaagaaccttgac |
28564902 |
T |
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| Q |
201 |
caaaccacactcaacgtccatcctg |
225 |
Q |
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| T |
28564903 |
caaaccacactcaacgtccatcctg |
28564927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 28578832 - 28579043
Alignment:
| Q |
23 |
atcctataaaagcttggtttcatgaatagatactgttgtaaactcaaaaa-cattatagaatgatatataata-----------aactattatgctttct |
110 |
Q |
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| T |
28578832 |
atcctataaaagcttggtttcatgtatggatattgttgtaaactcaaaaatcactat-gaatgaaagataatattttgatatgaaacttttattctttca |
28578930 |
T |
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| Q |
111 |
tgtatagatacatgagcatgcatcctataaaagcttggtatattttcttgtgcttcacctgaaagttatggatttgccaagaaccttgaccaaaccacac |
210 |
Q |
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| T |
28578931 |
tacatagatacatgagcaaacatcctatacaagcatggcatattttcttgtgcttcacgtg-aagttatgggttttctatgaaccttgacccaaccacac |
28579029 |
T |
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| Q |
211 |
tcaacgtccatcct |
224 |
Q |
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| T |
28579030 |
tcaacgtccttcct |
28579043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1983 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1983
Description:
Target: scaffold1983; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 222
Target Start/End: Original strand, 74 - 202
Alignment:
| Q |
93 |
taaactattatgctttcttgtatagatacatgagcatgcatcctataaaagcttggtatattttcttgtgcttcacctgaaagttatggatttgccaaga |
192 |
Q |
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| T |
74 |
taaacttttatgctttcatgtatagatacatgagcaaacatcgtacaaaagcatgtcatatttttttgtgcttcacgtg-aagttatgagttttcaatga |
172 |
T |
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| Q |
193 |
accttgaccaaaccacactcaacgtccatc |
222 |
Q |
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| T |
173 |
accttgacccgaccacactcaacgtccatc |
202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 1408 - 1317
Alignment:
| Q |
4 |
ttctaatacatgagcaaacatcctataaaagcttggtttcatgaatagatactgttgtaaactcaaaaa-cattatagaatgatatataata |
94 |
Q |
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| T |
1408 |
ttctaatataggagcaaacatcctagaagagctaggtttcaagcatagatattgttgtaaactcaaaaatgattatagaatgaaaaataata |
1317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 28961191 - 28961135
Alignment:
| Q |
30 |
aaaagcttggtttcatgaatagatactgttgtaaactcaaaaa-cattatagaatga |
85 |
Q |
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| T |
28961191 |
aaaagcttgggttcatgtatagatactgttgtaaactcaaaaatcatcatagaatga |
28961135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 921 - 829
Alignment:
| Q |
130 |
gcatcctataaaagcttggtatattttcttgtgcttcacctgaaagttatggatttgccaagaaccttgaccaaaccacactcaacgtccatcc |
223 |
Q |
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| T |
921 |
gcatcctatacaaacatggcatattttcttgtgcttcacgtg-aagttatgagttttctatgaaccttgacccgaccactcttaacgtccatcc |
829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 921 - 829
Alignment:
| Q |
130 |
gcatcctataaaagcttggtatattttcttgtgcttcacctgaaagttatggatttgccaagaaccttgaccaaaccacactcaacgtccatcc |
223 |
Q |
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|||||||||| || | ||| ||||||||||||||||||| || |||||||| ||| | | ||||||||||| ||||| || ||||||||||| |
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| T |
921 |
gcatcctatacaaacatggcatattttcttgtgcttcacgtg-aagttatgagttttctatgaaccttgacccgaccactcttaacgtccatcc |
829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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