View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8862_low_3 (Length: 441)

Name: NF8862_low_3
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8862_low_3
NF8862_low_3
[»] chr5 (1 HSPs)
chr5 (7-423)||(33032214-33032633)
[»] chr3 (1 HSPs)
chr3 (324-423)||(29335294-29335393)
[»] chr2 (1 HSPs)
chr2 (334-409)||(45217859-45217934)
[»] chr4 (2 HSPs)
chr4 (363-423)||(687103-687163)
chr4 (363-423)||(704470-704530)
[»] chr1 (1 HSPs)
chr1 (334-382)||(2867119-2867167)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 33032214 - 33032633
Alignment:
Q  7 gggtagattattctatgtctacacaaggattcacctcagtgagtatgaaattctgttgtgcaccacccgccccagattcttgtcgaaaactacctggcca 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  33032214 gggtagatttttctatgtctacacaaggattcacctcagtgagtatgaaattctgttgagcaccacccgccccggattcttgtcgaaaactacctggcca 33032313  T
Q  107 catcaactttgactcctcgtcttccaagaatattggaaatccgacgcaaccttgttgctcgaatctcatattatttctcacctcatga---tgaggccta 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  33032314 catcaactttgactcctcgtcttccaagaatattggaaatccgacgcaaccttgttgctcgaatctcatattatttctcacctcatgatgatgaggccta 33032413  T
Q  204 attggtgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaactagcattat 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032414 attgttgttggtgagaaaccatagtgcattgaagagtgtgcttttatccctaatgacctaaaagaaccatgcaaaggtaaagatgctaaactagcattat 33032513  T
Q  304 acctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaa 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33032514 acctatcagaaaacattcccattctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaa 33032613  T
Q  404 ctttctctgacagtaattgc 423  Q
    ||||||||||||||||||||    
T  33032614 ctttctctgacagtaattgc 33032633  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 423
Target Start/End: Original strand, 29335294 - 29335393
Alignment:
Q  324 attctcatagctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgc 423  Q
    |||| ||||||||  |||||||||||||||||||| || ||||||||||| || |||||||| || ||||| ||| |||| || | | ||||||||||||    
T  29335294 attcgcatagctcgctttgctaatgttctttctctcttgtgtgcattttgatgaccaccaagtgcctgagagctgtaaaatttgcgccgacagtaattgc 29335393  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 45217859 - 45217934
Alignment:
Q  334 ctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttct 409  Q
    |||||||||| |  |||||||||||||| ||||||||||||||||||||||| || || |||||  ||||||||||    
T  45217859 ctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttct 45217934  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 687103 - 687163
Alignment:
Q  363 tgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgc 423  Q
    ||||||||||||||||| ||||| |||||||||||  |||||||||| || ||||| ||||    
T  687103 tgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgc 687163  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 704470 - 704530
Alignment:
Q  363 tgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgc 423  Q
    ||||||||||||||||| ||||| |||||||||||  |||||||||| || ||||| ||||    
T  704470 tgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgc 704530  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 382
Target Start/End: Original strand, 2867119 - 2867167
Alignment:
Q  334 ctctttttgctaatgttctttctcttttatgtgcattttggtgtccacc 382  Q
    |||||||||||| || ||| |||||||| || |||||||||||||||||    
T  2867119 ctctttttgctattgatctctctcttttgtgagcattttggtgtccacc 2867167  T

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