View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8862_low_5 (Length: 414)

Name: NF8862_low_5
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8862_low_5
NF8862_low_5
[»] chr8 (9 HSPs)
chr8 (1-395)||(2033007-2033389)
chr8 (132-395)||(2054254-2054504)
chr8 (308-395)||(2046439-2046526)
chr8 (243-395)||(1950385-1950522)
chr8 (308-395)||(2037062-2037149)
chr8 (303-395)||(2028471-2028560)
chr8 (303-393)||(2050250-2050337)
chr8 (307-395)||(10767646-10767731)
chr8 (353-393)||(2057213-2057253)
[»] chr4 (1 HSPs)
chr4 (303-395)||(48908694-48908783)
[»] chr2 (2 HSPs)
chr2 (353-395)||(28786155-28786197)
chr2 (116-160)||(42408445-42408489)


Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 2033389 - 2033007
Alignment:
Q  1 cacttttaacaatctagagaactaatgaagagaacaaaataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatacaaatgttactc 100  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033389 cactcttaaccatctagagaactaatgaagagaacaaaataacaaacgcgattaaagtttcattagaatgagcaaaatcttcaaaatacaaatgttactc 2033290  T
Q  101 tcaaaatataaagtgaaatataaatagacgtaactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtca 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2033289 tcaaaatatatagtgaaatataaatagacgtaactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtta 2033190  T
Q  201 gacactcaacgcgcatccaatctgaaatttcagtgctacaaatgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacataccc 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||         
T  2033189 gacactcaacgcgcatccaatctgaaatttcggtgctacaaatgataatgaccaaatttcaaggagcaaataaattttacacatatgcataaaca----- 2033095  T
Q  301 ataaacatacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2033094 -------tacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 2033007  T

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Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 132 - 395
Target Start/End: Complemental strand, 2054504 - 2054254
Alignment:
Q  132 aactacccttatctcaattataacaaaagaaccattacatattatttaaacagacacaaacacatgtcagacactcaacgcgcatccaatctgaaatttc 231  Q
    ||||||||||| |  ||||||||||||||  |||||||||||||||||| ||||||||||||  ||| | ||||||||||||||||||||||||||||||    
T  2054504 aactacccttagccgaattataacaaaaggcccattacatattatttaa-cagacacaaacatgtgtaatacactcaacgcgcatccaatctgaaatttc 2054406  T
Q  232 agtgctacaaatgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacatacccataaacatacctgcataccacaggaaactct 331  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||| || | ||||||||            ||||||||||||||||||||||||    
T  2054405 agtgctacaaatgataataacaaaatatcaaggagcaaataaattttacagatgtacataaaca------------tacctgcataccacaggaaactct 2054318  T
Q  332 tgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    | |||||||| |||||||||||||||||||| |||   |||||||||| |||||||||||||||    
T  2054317 tctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctg 2054254  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 2046526 - 2046439
Alignment:
Q  308 tacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||   |||| |||| ||||||||||||||||    
T  2046526 tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctg 2046439  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 395
Target Start/End: Original strand, 1950385 - 1950522
Alignment:
Q  243 tgataataaccaaatttcaaggagcaaataaattttacacatatgcataaacatacccataaacatacctgcataccacaggaaactcttgtggtttgat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||             |||| |||||||||||||| |||||||| ||||||||||||      
T  1950385 tgataataaccaaatttcaaggagcaaataaattttacacatat------------acatatacatacctgcatacaacaggaaaatcttgtggtttggg 1950472  T
Q  343 agtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    |||||||   ||||||||||||||   | || |||||||||||||||||||||    
T  1950473 agtatca---ggagccaagtaacaagcacaagtatccctccaattgagtgctg 1950522  T

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Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 395
Target Start/End: Complemental strand, 2037149 - 2037062
Alignment:
Q  308 tacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    ||||||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||   |||| |||| ||||||||||||||||    
T  2037149 tacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctg 2037062  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 395
Target Start/End: Complemental strand, 2028560 - 2028471
Alignment:
Q  303 aaacatacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    |||||||||||||||| |||||||| |||| |||||||  |||||||   ||||||||| ||||  || || |||||||||||||||||||||    
T  2028560 aaacatacctgcatacaacaggaaaatcttctggtttgggagtatca---ggagccaaggaacaagtacaagtatccctccaattgagtgctg 2028471  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 393
Target Start/End: Complemental strand, 2050337 - 2050250
Alignment:
Q  303 aaacatacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgc 393  Q
    ||||||||||||| ||  | ||||| |||| |||||||  |||||||||   |||||||||||||  ||||||||||||||||||||||||    
T  2050337 aaacatacctgcacactgcgggaaaatcttctggtttgggagtatcagg---agccaagtaacacgcaaaactatccctccaattgagtgc 2050250  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 10767731 - 10767646
Alignment:
Q  307 atacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    |||||||||||| |||||||  |||| |||||||  |||||||||   ||||||||||||  ||||| ||||||||||||| |||||||    
T  10767731 atacctgcatactacaggaatatcttctggtttgggagtatcagg---agccaagtaacatgtaaaagtatccctccaattaagtgctg 10767646  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 2057253 - 2057213
Alignment:
Q  353 ggagccaagtaacacataaaactatccctccaattgagtgc 393  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  2057253 ggagccaagtaacaactaaaactatccctccaattgagtgc 2057213  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 48908694 - 48908783
Alignment:
Q  303 aaacatacctgcataccacaggaaactcttgtggtttgatagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    |||||||||||||||| | |||||| |||| |||||||  |||||||||   ||||||| |||| |||||| |||||||||||||||| ||||    
T  48908694 aaacatacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctg 48908783  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 28786155 - 28786197
Alignment:
Q  353 ggagccaagtaacacataaaactatccctccaattgagtgctg 395  Q
    ||||||||| |||||| |||| |||||||||||||||||||||    
T  28786155 ggagccaaggaacacacaaaagtatccctccaattgagtgctg 28786197  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 42408489 - 42408445
Alignment:
Q  116 aaatataaatagacgtaactacccttatctcaattataacaaaag 160  Q
    ||||||||| ||||  ||||||||||| |||||||||||||||||    
T  42408489 aaatataaagagactaaactacccttagctcaattataacaaaag 42408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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