View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8862_low_9 (Length: 306)

Name: NF8862_low_9
Description: NF8862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8862_low_9
NF8862_low_9
[»] chr5 (3 HSPs)
chr5 (5-298)||(29244994-29245290)
chr5 (47-85)||(29245621-29245659)
chr5 (173-211)||(42036575-42036613)
[»] chr6 (1 HSPs)
chr6 (147-211)||(13676008-13676072)
[»] scaffold0857 (1 HSPs)
scaffold0857 (162-212)||(881-931)
[»] chr4 (1 HSPs)
chr4 (175-211)||(33124736-33124772)
[»] scaffold0167 (1 HSPs)
scaffold0167 (173-212)||(34750-34789)
[»] chr8 (1 HSPs)
chr8 (162-208)||(17772974-17773020)
[»] chr1 (1 HSPs)
chr1 (162-208)||(19445045-19445091)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-211)||(96067-96116)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 5 - 298
Target Start/End: Complemental strand, 29245290 - 29244994
Alignment:
Q  5 tacaagttgccacctagagaaccaaattgtatatcaacctaaattttgaaaatcatgctccacggtagttaaccaccgctagagnnnnnnnnnn--aagt 102  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||            ||||    
T  29245290 tacaagttgccacctagagaaccaaactgtatatcaacctaaattttgaaaattatgctccacggtagttaaccactgctagagttttttttttttaagt 29245191  T
Q  103 tataaatgtgaacggtagttaaatacggctggaaaagccga-ccattgggggtataacgatcattttcatatgtttttaagcaaaatttgatgtgagaaa 201  Q
    |||||||||||||||||||||||||||||   ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29245190 tataaatgtgaacggtagttaaatacggcccaaaaagccgaaccgttggaggtataacgatcattttcatatgtttttaagcaaaatttgatgtgagaaa 29245091  T
Q  202 ggcaattttcccacttttaagcatgcaaatgagagagctcattgggccatgatcgaacagtaacttagctcgtttgctttatacaccggtctctgct 298  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  29245090 ggcaattttcccacttttaagcatggaaatgagagagctcgttgggccgtgatcgaacagtaactttgctcgtttgctttatacaccggtctttgct 29244994  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 29245621 - 29245659
Alignment:
Q  47 attttgaaaatcatgctccacggtagttaaccaccgcta 85  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  29245621 attttgaaaatcatgctccacggtagttaactaccgcta 29245659  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 42036575 - 42036613
Alignment:
Q  173 tgtttttaagcaaaatttgatgtgagaaaggcaattttc 211  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  42036575 tgtttttaagcaaaacttgatgtgagaaaagcaattttc 42036613  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 13676008 - 13676072
Alignment:
Q  147 ttgggggtataacgatcattttcatatgtttttaagcaaaatttgatgtgagaaaggcaattttc 211  Q
    |||| |||| |||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||    
T  13676008 ttggaggtacaacggtcattttcatgtgtttttaggcaaaacttgatgtgagaaaagcaattttc 13676072  T

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Target: scaffold0857 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0857
Description:

Target: scaffold0857; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 881 - 931
Alignment:
Q  162 tcattttcatatgtttttaagcaaaatttgatgtgagaaaggcaattttcc 212  Q
    |||||||||| |||||||||||||| ||||||||| |||| ||||||||||    
T  881 tcattttcatgtgtttttaagcaaattttgatgtgggaaatgcaattttcc 931  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 33124772 - 33124736
Alignment:
Q  175 tttttaagcaaaatttgatgtgagaaaggcaattttc 211  Q
    ||||||||||||||||||||||||||| |||||||||    
T  33124772 tttttaagcaaaatttgatgtgagaaaagcaattttc 33124736  T

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Target: scaffold0167 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 34789 - 34750
Alignment:
Q  173 tgtttttaagcaaaatttgatgtgagaaaggcaattttcc 212  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  34789 tgtttttaagcaaaagttgatgtgagaaaagcaattttcc 34750  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 17773020 - 17772974
Alignment:
Q  162 tcattttcatatgtttttaagcaaaatttgatgtgagaaaggcaatt 208  Q
    |||||||||| |||||||||||||| ||||||||| |||| ||||||    
T  17773020 tcattttcatgtgtttttaagcaaattttgatgtgggaaacgcaatt 17772974  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 19445045 - 19445091
Alignment:
Q  162 tcattttcatatgtttttaagcaaaatttgatgtgagaaaggcaatt 208  Q
    |||||||||| |||||||||||||| ||||||||| |||| ||||||    
T  19445045 tcattttcatgtgtttttaagcaaattttgatgtgggaaacgcaatt 19445091  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 96116 - 96067
Alignment:
Q  162 tcattttcatatgtttttaagcaaaatttgatgtgagaaaggcaattttc 211  Q
    ||||||||||||||||||| | || | ||||||||||||| |||||||||    
T  96116 tcattttcatatgtttttaggaaataattgatgtgagaaaagcaattttc 96067  T

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