View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8863_high_1 (Length: 444)

Name: NF8863_high_1
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8863_high_1
NF8863_high_1
[»] chr7 (9 HSPs)
chr7 (21-401)||(26573893-26574281)
chr7 (122-198)||(35516409-35516485)
chr7 (101-196)||(37807079-37807174)
chr7 (104-181)||(31673662-31673739)
chr7 (101-196)||(18533272-18533367)
chr7 (101-196)||(11410642-11410737)
chr7 (101-172)||(46191600-46191671)
chr7 (99-172)||(10227977-10228050)
chr7 (104-196)||(2732414-2732506)
[»] chr4 (11 HSPs)
chr4 (119-196)||(23370582-23370659)
chr4 (105-196)||(24390814-24390905)
chr4 (101-196)||(41487565-41487660)
chr4 (104-169)||(8946321-8946385)
chr4 (101-166)||(517669-517734)
chr4 (103-196)||(32212309-32212402)
chr4 (104-196)||(16711867-16711959)
chr4 (104-196)||(38307981-38308073)
chr4 (104-196)||(40730346-40730438)
chr4 (104-172)||(42431689-42431757)
chr4 (104-196)||(48826124-48826216)
[»] chr5 (5 HSPs)
chr5 (134-196)||(24510206-24510268)
chr5 (104-196)||(42288415-42288507)
chr5 (104-196)||(4049349-4049441)
chr5 (104-196)||(12724840-12724932)
chr5 (104-196)||(31271341-31271433)
[»] chr6 (6 HSPs)
chr6 (135-200)||(9283814-9283879)
chr6 (101-196)||(33627849-33627944)
chr6 (99-196)||(3728960-3729057)
chr6 (99-196)||(24848991-24849088)
chr6 (195-231)||(19231553-19231589)
chr6 (104-196)||(27613399-27613491)
[»] chr3 (11 HSPs)
chr3 (101-196)||(20647705-20647800)
chr3 (130-177)||(28125886-28125933)
chr3 (101-196)||(55008212-55008307)
chr3 (135-196)||(40459098-40459159)
chr3 (105-196)||(36672745-36672836)
chr3 (104-196)||(34422576-34422668)
chr3 (104-196)||(41873506-41873598)
chr3 (101-196)||(25536957-25537052)
chr3 (104-198)||(39391174-39391268)
chr3 (104-172)||(36265765-36265833)
chr3 (104-196)||(40488955-40489047)
[»] chr8 (5 HSPs)
chr8 (104-196)||(36054551-36054643)
chr8 (101-196)||(11989150-11989245)
chr8 (147-197)||(12939330-12939380)
chr8 (130-190)||(14540863-14540923)
chr8 (104-160)||(23444507-23444563)
[»] chr1 (5 HSPs)
chr1 (104-172)||(16452509-16452577)
chr1 (104-172)||(16461661-16461729)
chr1 (104-196)||(45372692-45372784)
chr1 (101-196)||(31502273-31502368)
chr1 (104-196)||(2988775-2988867)
[»] chr2 (7 HSPs)
chr2 (101-196)||(18075689-18075784)
chr2 (101-196)||(38213517-38213612)
chr2 (147-182)||(39230993-39231028)
chr2 (122-196)||(32084049-32084123)
chr2 (104-181)||(12033748-12033825)
chr2 (104-172)||(6431640-6431708)
chr2 (104-160)||(42077073-42077129)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 21 - 401
Target Start/End: Complemental strand, 26574281 - 26573893
Alignment:
Q  21 tgataggtctgacctatgaaattttttgcaagcccgagcctgacatatggtctttcataggtttannnnnnng-tctatc-ttgacctatttaaaagttt 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||       | |||||| ||||||||||||||||| |    
T  26574281 tgataggtctgacctatgaaattttttgcaagctcgagcctgacatatggtccttcataggtttatttttttggtctatccttgacctatttaaaagtct 26574182  T
Q  119 agtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaatatgtccagaaagtagaactaaaa 218  Q
    ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26574181 agtctggcctgaaaacctatttacaggtctacttcacattaaaatcattaaatattcaattttgtttacttctaaatatgtccggaaagtagaactaaaa 26574082  T
Q  219 tttagaaaaa-----acttatacagaagagnnnnnnnn-gtaacatgtaattttttcttcataaaaacctctcctgagaatccaaaacggtgtgaaaaaa 312  Q
    | ||||||||     || ||||  ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26574081 tctagaaaaacttatacgtatattgaagagaaaaaaaaagtaacatgtaattttttcttcataaaaacctctcctgagaatccaaaacggtgtgaaaaaa 26573982  T
Q  313 tgctttgatatattttttcttctcttcccagttcccacatcaacaaacaccacaacttcaattttagttttattatgattacgatatat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26573981 tgctttgatatattttttcttctcttcccagttcccacatcaacaaacaccacaacttcaattttagttttattatgattacgatatat 26573893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 35516485 - 35516409
Alignment:
Q  122 ctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaatatg 198  Q
    |||| ||||||  ||||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||||    
T  35516485 ctggcctgaaagcctatttacaggcctactttatattaaagtcattaaatattcaattttgtatacttctaaatatg 35516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 37807079 - 37807174
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||| | | |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| ||||||| ||||||    
T  37807079 tgacctatttaaaaatctggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatttacttttaaata 37807174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 31673662 - 31673739
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaatttt 181  Q
    ||||||||||||| | | |||| ||||||| ||||||||||| ||||||   ||||||||||||||| |||| |||||    
T  31673662 cctatttaaaagtctggcctggcctgaaaacctatttacaggcctacttactattaaagtcattaaacattccatttt 31673739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 18533367 - 18533272
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcac-attaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||  | |||||| ||||||  |||||||||||||||| |||| |||||||||| |||| |||| ||||| | ||||| ||||||    
T  18533367 tgacctatttaaaagcatggtctggcctgaaagcctatttacaggtctac-tcactattaaagtcactaaacattccattttatctacttttaaata 18533272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 11410642 - 11410737
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  11410642 tgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 11410737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 172
Target Start/End: Complemental strand, 46191671 - 46191600
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    |||||||||||||||| ||| |||| ||||||  ||| ||||| | |||||||||||||||| ||| |||||    
T  46191671 tgacctatttaaaagtctagactggcctgaaagcctacttacaagcctacttcacattaaagccatcaaata 46191600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 10227977 - 10228050
Alignment:
Q  99 cttgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    |||| ||||||||||||| | | |||| ||||||  ||| ||||||| |||||||||||||| ||||| |||||    
T  10227977 cttggcctatttaaaagtctggactggcctgaaagcctacttacaggactacttcacattaaggtcatcaaata 10228050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 2732414 - 2732506
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||  | |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  2732414 cctatttaaaagcctggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 2732506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 23370582 - 23370659
Alignment:
Q  119 agtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||| |||||||| ||| |||||||| |||||| |||||||| |||||||||||| ||||||||||||    
T  23370582 agtctggtctgaaagtctatttaaaggcctacttcatattaaaatcattaaacattcaattttgtctacttctaaata 23370659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 24390905 - 24390814
Alignment:
Q  105 ctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||| |||||| | || |||  ||||||||| | |||||  | ||||||||||||||||||| |||||||| ||||| ||||||    
T  24390905 ctatttaaaagtctagtctagcctaaaagcctatttacatgcctactatatattaaagtcattaaatatttaattttgtctacttttaaata 24390814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 41487565 - 41487660
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| ||| |||| ||||||  ||||||||||| ||||||   ||||||||||||||| |||  ||||| | ||||| ||||||    
T  41487565 tgacctatttaaaagtctagcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacatttcattttatctacttttaaata 41487660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 8946385 - 8946321
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaa 169  Q
    ||||||||||||||||||||    ||||| |||||||||||| |||||||| ||||||||||||||    
T  8946385 cctatttaaaagtttagtctcaa-tgaaagtctatttacaggcctacttcatattaaagtcattaa 8946321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 517669 - 517734
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcat 166  Q
    |||||||||||||||  | | ||| ||||||| |||| ||||||| |||||||||||||| |||||    
T  517669 tgacctatttaaaagcctggactgatctgaaagtctacttacaggcctacttcacattaaggtcat 517734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 32212309 - 32212402
Alignment:
Q  103 acctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||  | |||||| ||||||   |||| ||||| ||||||   |||||||||| |||| |||||||||||| ||||| ||||||    
T  32212309 acctatttaaaagcctggtctggcctgaaagcttattcacaggcctacttactattaaagtcactaaacattcaattttgtctacttttaaata 32212402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 16711867 - 16711959
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||  ||||||| ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  16711867 cctatttaaaagtctggcctgacctgaaaacctatttacaggcctacttactattaaagtcactaaacattccattttatatacttttaaata 16711959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 38308073 - 38307981
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  38308073 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 38307981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 40730438 - 40730346
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||  ||| |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  40730438 cctatttaaaagcctagcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 40730346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 42431757 - 42431689
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    ||||||||||||| | | |||| ||||||  ||| |||||||||||||||| ||||| ||||| |||||    
T  42431757 cctatttaaaagtctggactggcctgaaagcctacttacaggtctacttcatattaaggtcatcaaata 42431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 48826124 - 48826216
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| ||| |||| ||||||  ||||||| ||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  48826124 cctatttaaaagtctagcctggcctgaaagcctatttataggcctacttactattaaagtcactaaacattccattttatctacttttaaata 48826216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 196
Target Start/End: Original strand, 24510206 - 24510268
Alignment:
Q  134 tctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||| |||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  24510206 tctatttacaggcctacttgatattaaagtcattaaatattcaattttgtctacttctaaata 24510268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 42288507 - 42288415
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | |||||||||||||| ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  42288507 cctatttaaaagtctggtctggtctgaaaacctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 42288415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 4049441 - 4049349
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   ||||||||||||||| |||| ||||| | ||||| ||||||    
T  4049441 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacattccattttatctacttttaaata 4049349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 12724932 - 12724840
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||| ||||||| | |||||| ||||||  |||||||||||  |||||   || |||||||||||| |||| ||||| ||||||| ||||||    
T  12724932 cctatctaaaagtctggtctggcctgaaagcctatttacaggcatacttattataaaagtcattaaacattctattttatttacttttaaata 12724840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 31271433 - 31271341
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  31271433 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 31271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 9283879 - 9283814
Alignment:
Q  135 ctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaatatgtc 200  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||| || || ||||||||||    
T  9283879 ctatttacaggcctatttcatattaaagtcattaaatattcaattttgtctaattttaaatatgtc 9283814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 33627944 - 33627849
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||||| || |||||| ||  ||   |||||||| |||||||||| |||||||| |||| |||||||||||||| ||||| ||||||    
T  33627944 tgacctatttaaaagcttggtctggcctagaagcatatttacatgtctacttcatattaaagttattatatattcaattttgtatacttataaata 33627849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 3729057 - 3728960
Alignment:
Q  99 cttgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||| ||||||||||||| | |||||| ||||||  ||||||||||  ||||||   ||||||||||||||| |||| ||||| | ||||| ||||||    
T  3729057 cttggcctatttaaaagtctggtctggcctgaaagcctatttacagacctacttactattaaagtcattaaacattccattttatctacttttaaata 3728960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 24848991 - 24849088
Alignment:
Q  99 cttgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||||  | | |||| || |||| ||||||||||| ||||||   |||||||||| |||| |||||||||| | ||||| ||||||    
T  24848991 cttgacctatttaaaagcctggcctggcctaaaaacctatttacaggcctacttactattaaagtcactaaacattcaattttatctacttttaaata 24849088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 19231589 - 19231553
Alignment:
Q  195 tatgtccagaaagtagaactaaaatttagaaaaaact 231  Q
    ||||||||||||||||||||||| | |||||||||||    
T  19231589 tatgtccagaaagtagaactaaactctagaaaaaact 19231553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 27613399 - 27613491
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  27613399 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 27613491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 20647800 - 20647705
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| | | |||| |||||| |||||||||||| ||||||   ||||||||||||||| |||| ||||| | ||||| ||||||    
T  20647800 tgacctatttaaaagtctggcctggcctgaaagtctatttacaggcctacttactattaaagtcattaaacattccattttatctacttttaaata 20647705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 28125886 - 28125933
Alignment:
Q  130 aaaatctatttacaggtctacttcacattaaagtcattaaatattcaa 177  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||    
T  28125886 aaaacctatttacaggtctacttcatattaaagtcattaaatattcaa 28125933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 55008212 - 55008307
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||||| |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  55008212 tgacctatttaaaagtttggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattctattttatctacttttaaata 55008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 40459098 - 40459159
Alignment:
Q  135 ctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||  |||| || |||||||| ||||||||||||||||||| ||||||||||||    
T  40459098 ctatttacaggcatactccatattaaagtaattaaatattcaattttgtgtacttctaaata 40459159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 36672836 - 36672745
Alignment:
Q  105 ctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||| | |||  ||||||   |||||||| | |||||| | ||||| || ||||||||||||||||||| ||||||||||||    
T  36672836 ctatttaaaagtttggcctgacctgaaagcatatttacatgcctactttaaattaacgtaattaaatattcaattttgtctacttctaaata 36672745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 34422668 - 34422576
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   ||||||||||||||| |||| ||||| | ||||| ||||||    
T  34422668 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcattaaacattccattttatctacttttaaata 34422576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 41873506 - 41873598
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| |||||| |||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  41873506 cctatttaaaagtatggcctggcctgaaagtctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 41873598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 25536957 - 25537052
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||  | |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  25536957 tgacctatttaaaagcctggtctggcctgaaagcctatttacaggcctacttattattaaagtcactaaacattccattttatctacttttaaata 25537052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 39391174 - 39391268
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaatatg 198  Q
    ||||||||||||  | | |||||||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||||    
T  39391174 cctatttaaaagcctggcctggtctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaatatg 39391268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 36265833 - 36265765
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    ||||||||||||  | | ||||||||||| |||| ||||||  |||||||||||||| ||||| |||||    
T  36265833 cctatttaaaagcctcgactggtctgaaagtctacttacagacctacttcacattaaggtcatcaaata 36265765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 40489047 - 40488955
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  40489047 cctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 40488955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 36054643 - 36054551
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||| | |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  36054643 cctatttaaaagtctggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 36054551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 11989150 - 11989245
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||| | | | |||| ||||||  ||||||||||| ||||||  ||||||||||| |||| |||| ||||| | ||||| ||||||    
T  11989150 tgacctatttaaaattctggcctggcctgaaagcctatttacaggcctacttaccattaaagtcactaaacattccattttatctacttttaaata 11989245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 147 - 197
Target Start/End: Original strand, 12939330 - 12939380
Alignment:
Q  147 ctacttcacattaaagtcattaaatattcaattttgtttacttctaaatat 197  Q
    |||||||||||||||||||||||||| |  ||||| | |||||||||||||    
T  12939330 ctacttcacattaaagtcattaaataattcattttatctacttctaaatat 12939380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 14540923 - 14540863
Alignment:
Q  130 aaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttc 190  Q
    |||| ||| |||||||||||||||| |||||||| |||| ||| |||||||| | ||||||    
T  14540923 aaaacctagttacaggtctacttcaaattaaagtgattacatagtcaattttatctacttc 14540863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 23444507 - 23444563
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaa 160  Q
    ||||||||||||| | | |||| |||||| |||| ||||||| ||||||||||||||    
T  23444507 cctatttaaaagtctggactggcctgaaagtctacttacaggcctacttcacattaa 23444563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 16452509 - 16452577
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    ||||||||||||||| | |||| ||||||  ||| ||||||| |||||||||||||| ||||| |||||    
T  16452509 cctatttaaaagtttggactggcctgaaagcctacttacaggcctacttcacattaaggtcatcaaata 16452577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 16461661 - 16461729
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    ||||||||||||||| | |||| ||||||  ||| ||||||| |||||||||||||| ||||| |||||    
T  16461661 cctatttaaaagtttggactggcctgaaagcctacttacaggcctacttcacattaaggtcatcaaata 16461729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 45372784 - 45372692
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||||| | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  45372784 cctatttaaaagtttggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 45372692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 31502368 - 31502273
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| ||| | |  ||||||  ||||||| ||   || |||| ||||||||||||||||| |||||||| ||||||| ||||||    
T  31502368 tgacctatttaaaagtctagaccgacctgaaagcctatttatagacatatttcatattaaagtcattaaatactcaattttatttacttttaaata 31502273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 2988775 - 2988867
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    ||||||||||||  | ||||||  ||||| |||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  2988775 cctatttaaaagcctggtctggcatgaaagtctatttacaggcctacttactattaaagtcactaaacattctattttatctacttttaaata 2988867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 18075784 - 18075689
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| | | |||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  18075784 tgacctatttaaaagtctggcctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccattttatctacttttaaata 18075689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 38213517 - 38213612
Alignment:
Q  101 tgacctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||||||| | | |||  ||||||  ||||||||||||||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  38213517 tgacctatttaaaagtctggcctgacctgaaagcctatttacaggtctacttactattaaagtcactaaacattccattttatctacttttaaata 38213612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 182
Target Start/End: Original strand, 39230993 - 39231028
Alignment:
Q  147 ctacttcacattaaagtcattaaatattcaattttg 182  Q
    |||||||| |||||||||||||||||||||||||||    
T  39230993 ctacttcatattaaagtcattaaatattcaattttg 39231028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 32084123 - 32084049
Alignment:
Q  122 ctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaattttgtttacttctaaata 196  Q
    |||||||||||  ||||||||||||||||||   |||||||||| |||| |||| ||||| | ||||| ||||||    
T  32084123 ctggtctgaaagcctatttacaggtctacttactattaaagtcactaaacattccattttatctacttttaaata 32084049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 12033825 - 12033748
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaatattcaatttt 181  Q
    ||||||||||||| | |||||| ||||||  ||||||||||| ||||||   |||||||||| |||| |||| |||||    
T  12033825 cctatttaaaagtctggtctggcctgaaagcctatttacaggcctacttactattaaagtcactaaacattccatttt 12033748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 6431640 - 6431708
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaaagtcattaaata 172  Q
    ||||||||||||  | | |||| ||||||  ||| |||||||||||||||||||||| ||||| |||||    
T  6431640 cctatttaaaagcctggactggcctgaaagcctacttacaggtctacttcacattaaggtcatcaaata 6431708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 42077073 - 42077129
Alignment:
Q  104 cctatttaaaagtttagtctggtctgaaaatctatttacaggtctacttcacattaa 160  Q
    ||||||||||||| | | |||||||||||  ||| ||||||| ||||||||||||||    
T  42077073 cctatttaaaagtctggactggtctgaaagcctacttacaggcctacttcacattaa 42077129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University