View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8863_high_2 (Length: 439)
Name: NF8863_high_2
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 48660112 - 48659787
Alignment:
| Q |
1 |
ggcatagctatgggaattcctccaatcaggagaacaagaaggttgttgattccatccctgtatgaacggtgctccacagggaacattataattatttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48660112 |
ggcatagctatgggaattcctccaatcaggagaacaagaaggttgttgattccatccctgtatgaacggtgctccacagggaacattataattatttcaa |
48660013 |
T |
|
| Q |
101 |
gaatcatccctatagctattgagcaaatgcagaagttaccaattgaggtaagaacctacagaaaagtaaacaattagatcacagtttaatatttgagtgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48660012 |
gaatcatccctatagctattgagcaaatgcagaagttgccaattgaggtaagaacctacagaaaagtaaacaattagatcacagtttaatatttgagtgg |
48659913 |
T |
|
| Q |
201 |
ttaataaaaaacttcgcaaaaataattttatattcaagtgaatttccatatataataaataattaatcttccttactcctctgttccagtttttgtcata |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48659912 |
ttaataaaaaactttgcaaaaataattttatattcaagtgaatttccatatataataaataattaatcttccttactcctctgttccagtttttgtcata |
48659813 |
T |
|
| Q |
301 |
agtaaatcaagccaggaattgtattg |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48659812 |
agtaaatcaagccaggaattgtattg |
48659787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 322 - 422
Target Start/End: Complemental strand, 48658392 - 48658292
Alignment:
| Q |
322 |
tattgcaacacccttcgtaaatatcttggctttgaatttttcgtatgaatgagacgatgctaaaaaatgttgaaagtttctgagagttaccatctgaaaa |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48658392 |
tattgcaacacccttcgtaaatatcttggctttgcatttttcgtatgaatgagacgatgctaaaaaatgttgaaagtttctgagagttaccttctgaaaa |
48658293 |
T |
|
| Q |
422 |
t |
422 |
Q |
| |
|
| |
|
|
| T |
48658292 |
t |
48658292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University