View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8863_high_5 (Length: 313)
Name: NF8863_high_5
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 182 - 296
Target Start/End: Complemental strand, 28313502 - 28313388
Alignment:
| Q |
182 |
cataatttaattctaatacaagttagagctgaaagtccaagaaagaatctcgagtgtttcaaccattcgtcccgtgactccagagaacccaacgctaacc |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28313502 |
cataatttaattctaatacaagttagagctgaaagtccaagaaagaatctcgagtgtttcaaccattcgtcccgtgactccagagaacccaacgctaacc |
28313403 |
T |
|
| Q |
282 |
ccgtcgggcagaact |
296 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28313402 |
ccgtcgggcagaact |
28313388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 28313713 - 28313642
Alignment:
| Q |
5 |
caaaaatgatgcaaaaaatacttttcttatttaatctaagggtcttgttaacgattgcttccgaaacactct |
76 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28313713 |
caaaaatgatgcaaaaagtacttttcttatttaatccaagggtcttgttaacaattgcttccgaaacactct |
28313642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 206 - 275
Target Start/End: Complemental strand, 28320925 - 28320856
Alignment:
| Q |
206 |
agagctgaaagtccaagaaagaatctcgagtgtttcaaccattcgtcccgtgactccagagaacccaacg |
275 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||| || ||||||| | || |||||||||||| |
|
|
| T |
28320925 |
agagctgaaagtccaagaaagaatcttgtgtgtttcaaccaatcctcccgtggcaccggagaacccaacg |
28320856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 28316636 - 28316542
Alignment:
| Q |
188 |
ttaattctaatacaagttagagctgaaagtccaagaaagaatctcgagtgtttcaaccattcgtcccgtgactccagagaacccaacgctaaccc |
282 |
Q |
| |
|
||||||||||| | | ||||| ||||| ||||||||||||||| | |||||||||| | || ||||||| | ||||||||||||||| |||||| |
|
|
| T |
28316636 |
ttaattctaattcttgctagagttgaaattccaagaaagaatcttgtgtgtttcaacaaatcctcccgtggcaccagagaacccaacgataaccc |
28316542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University