View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8863_high_7 (Length: 262)

Name: NF8863_high_7
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8863_high_7
NF8863_high_7
[»] chr6 (5 HSPs)
chr6 (1-243)||(34064329-34064573)
chr6 (99-220)||(19730405-19730525)
chr6 (99-195)||(19723361-19723457)
chr6 (99-214)||(9403335-9403450)
chr6 (175-220)||(12449472-12449517)
[»] chr5 (4 HSPs)
chr5 (91-220)||(22865918-22866047)
chr5 (115-243)||(24546476-24546604)
chr5 (175-242)||(25828877-25828944)
chr5 (111-220)||(25537562-25537671)
[»] chr7 (2 HSPs)
chr7 (92-243)||(13291929-13292080)
chr7 (91-231)||(16986897-16987037)
[»] chr2 (6 HSPs)
chr2 (90-187)||(19290656-19290753)
chr2 (172-235)||(15825296-15825359)
chr2 (99-232)||(19050248-19050381)
chr2 (131-219)||(29743947-29744035)
chr2 (170-229)||(18136019-18136078)
chr2 (176-236)||(29138043-29138103)
[»] scaffold0002 (1 HSPs)
scaffold0002 (130-231)||(379862-379963)
[»] chr1 (1 HSPs)
chr1 (127-231)||(23728661-23728765)
[»] scaffold0479 (1 HSPs)
scaffold0479 (169-231)||(5184-5246)
[»] scaffold0464 (1 HSPs)
scaffold0464 (170-232)||(11657-11719)
[»] chr4 (2 HSPs)
chr4 (102-236)||(16012288-16012422)
chr4 (91-155)||(14601820-14601884)
[»] chr3 (2 HSPs)
chr3 (165-235)||(12256969-12257039)
chr3 (91-232)||(12731366-12731507)
[»] scaffold0092 (1 HSPs)
scaffold0092 (109-201)||(21441-21533)
[»] scaffold0005 (1 HSPs)
scaffold0005 (91-155)||(215494-215558)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34064573 - 34064329
Alignment:
Q  1 ttgagaaatgatgtttatacaactatataataacaattttttggacaactcttcttct---actctcaaataatatatgttatggaccggtcagtggcca 97  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||     
T  34064573 ttgagaaatgatgtttatacaactatataatgacaattttttggacaactcttcttctcgtactctcaaataatatatgttatggaccggtcagtggccg 34064474  T
Q  98 aacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatg 197  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||| ||||||    
T  34064473 aacttacacctccttaagactccacacttaaggaagcacgccatcttgcgtaca-cgtaccacacaggagcgcgccttcgcgcaaggatcaccatacatg 34064375  T
Q  198 tgtcctacttcgcccctaatcacgcgccgcataactcggtgacggt 243  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||    
T  34064374 tgtcctacttcgcccctaatcacgtgccgcataacccggtgacggt 34064329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 19730405 - 19730525
Alignment:
Q  99 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 198  Q
    |||| ||||||||  ||||||| || ||||||||||| |||| ||||||| |||| || |||||| ||| | ||||||||||||| |||||||||||| |    
T  19730405 acttgcaccacctcgagactcctcacttaagggagcatgcca-cttgcgtgcaccatatcacataggagtgtgccttcgcgcaagtatcaccctacatat 19730503  T
Q  199 gtcctacttcgcccctaatcac 220  Q
     |||| ||||||||| ||||||    
T  19730504 ttcctgcttcgccccaaatcac 19730525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 19723361 - 19723457
Alignment:
Q  99 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctaca 195  Q
    ||||||||| ||| |||||||| || ||||| |||||||||| |   ||| |||| || |||| | ||||||||||||  |||||||||||||||||    
T  19723361 acttacaccgcctcaagactccgcacttaagagagcacgccagcccacgtgcaccataccacacaggagcgcgccttcaagcaaggatcaccctaca 19723457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 9403450 - 9403335
Alignment:
Q  99 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 198  Q
    |||| |||| ||| ||||||| ||| |||||||| || |||| ||||||| |||| |  |||| |  ||||||||||| | |||||| ||||||||| ||    
T  9403450 acttgcaccgcctcaagactctacacttaagggaacatgccagcttgcgtgcaccatgccacacaaaagcgcgccttcacacaaggaccaccctacacgt 9403351  T
Q  199 gtcctacttcgcccct 214  Q
    ||||| ||||| ||||    
T  9403350 gtcctgcttcgtccct 9403335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12449472 - 12449517
Alignment:
Q  175 tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcac 220  Q
    ||||||||||||||||||| | ||| |||||| |||||||||||||    
T  12449472 tcgcgcaaggatcaccctagacgtggcctactccgcccctaatcac 12449517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 22866047 - 22865918
Alignment:
Q  91 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 190  Q
    |||||||||||| |||| ||| |||||||| || |||||||||||||||| ||||||| |||  |  |||||| ||| ||||||||||||||||||||||    
T  22866047 gtggccaaactttcaccgcctcaagactccgcacttaagggagcacgccagcttgcgtgcactattccacataagagtgcgccttcgcgcaaggatcacc 22865948  T
Q  191 ctacatgtgtcctacttcgcccctaatcac 220  Q
    ||||| ||||| | || || ||||||||||    
T  22865947 ctacacgtgtcatgctccgtccctaatcac 22865918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 24546604 - 24546476
Alignment:
Q  115 gactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccct 214  Q
    |||||| || |||||||||||||||| ||||||| ||||||  |||| | |||||| ||| |||||||||||||||||||| ||||| | || || ||||    
T  24546604 gactccgcacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccct 24546505  T
Q  215 aatcacgcgccgcataactcggtgacggt 243  Q
    |||||| ||||||||||| ||| ||||||    
T  24546504 aatcacacgccgcataacccggagacggt 24546476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 25828877 - 25828944
Alignment:
Q  175 tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacgg 242  Q
    ||||||||||||| ||||||| |||||||| | ||||||||||||| ||||||||||| ||| |||||    
T  25828877 tcgcgcaaggatcgccctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacgg 25828944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 25537671 - 25537562
Alignment:
Q  111 ttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgc 210  Q
    |||||||||| || |||||||||||| ||| |  ||||||||| |  |||||| |||| |||| |||||||||||| |||||| | || ||||  ||||     
T  25537671 ttaagactccgcacttaagggagcacaccagcacgcgtacaccatgccacataggagctcgccctcgcgcaaggattaccctatacgtttcctgattcgt 25537572  T
Q  211 ccctaatcac 220  Q
    ||||||||||    
T  25537571 ccctaatcac 25537562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 13291929 - 13292080
Alignment:
Q  92 tggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccc 191  Q
    ||||| ||||| |||| ||| ||| |||| ||| ||||| ||||||||| |||||||  |||||  |||| | |||||||||||||||||||||||||||    
T  13291929 tggccgaacttgcaccgcctcaaggctccgcatctaaggaagcacgccagcttgcgtgaaccgtgccacacaggagcgcgccttcgcgcaaggatcaccc 13292028  T
Q  192 tacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggt 243  Q
    |||| ||||| | || || |||||| ||| ||||||||||| ||| ||||||    
T  13292029 tacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggt 13292080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 16986897 - 16987037
Alignment:
Q  91 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 190  Q
    |||| ||||||| |||| ||||||| |||| | | | | ||||||||||| || || | ||||||  |||||| ||| | ||| |||| |||||||||||    
T  16986897 gtggtcaaacttgcaccgccttaaggctccgcgtctgaaggagcacgccaactcgcatgcaccgtgccacataggagtgtgccctcgcacaaggatcacc 16986996  T
Q  191 ctacatgtgtcctacttcgcccctaatcacgcgccgcataa 231  Q
    || || ||||||| || |  |||||||||| | ||||||||    
T  16986997 ctgcacgtgtcctgctccatccctaatcacacaccgcataa 16987037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 19290753 - 19290656
Alignment:
Q  90 agtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatc 187  Q
    ||||||| |||||||||||||| ||| ||||||||| || ||||||||| ||||||||| ||||||  |||| | |||||||||| ||||||||||||    
T  19290753 agtggcctaacttacaccacctcaaggctccacattcaaaggagcacgcaatcttgcgtgcaccgtgccacacaggagcgcgcctccgcgcaaggatc 19290656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 15825359 - 15825296
Alignment:
Q  172 ccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcg 235  Q
    ||||||| ||||||||||||||||||||||||||| || || ||| ||| ||||||||||||||    
T  15825359 ccttcgcacaaggatcaccctacatgtgtcctactccgtccttaaacacacgccgcataactcg 15825296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 19050248 - 19050381
Alignment:
Q  99 acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt 198  Q
    ||||||||| |||||||||||| || || |||||||| || | || |||| |||| || |||| | ||||||||||| |||||| ||||||||||||  |    
T  19050248 acttacaccgccttaagactccgcactttagggagcaagcgacctcgcgtgcaccataccacacaggagcgcgcctttgcgcaaagatcaccctacacat 19050347  T
Q  199 gtcctacttcgcccctaatcacgcgccgcataac 232  Q
    ||||| || |   ||||||||  |||||||||||    
T  19050348 gtcctgctccatgcctaatcatacgccgcataac 19050381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 29743947 - 29744035
Alignment:
Q  131 gagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatca 219  Q
    |||||||||| ||||||| ||||||  ||||   ||||||||  |||||| |||||||||||||| ||||||| || || |||||||||    
T  29743947 gagcacgccagcttgcgtgcaccgtgccacacgggagcgcgctctcgcgctaggatcaccctacacgtgtcctgctccgtccctaatca 29744035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 18136078 - 18136019
Alignment:
Q  170 cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcat 229  Q
    |||| ||||||||||||||||||||||||||||| |  || |||||||||| || |||||    
T  18136078 cgccgtcgcgcaaggatcaccctacatgtgtcctgcaccgtccctaatcacacgtcgcat 18136019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 29138103 - 29138043
Alignment:
Q  176 cgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcgg 236  Q
    ||||| ||||| |||||||| |||| ||||| || |||||||||| ||| |||||||||||    
T  29138103 cgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcgg 29138043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 379963 - 379862
Alignment:
Q  130 ggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcat 229  Q
    |||||| |||| ||||||| ||||||  |||| | |||||||||||| |   |||||||||||||| ||||||| || || || ||||||| ||||||||    
T  379963 ggagcatgccagcttgcgtgcaccgtgccacacaggagcgcgccttcacaagaggatcaccctacacgtgtcctgctccgtccataatcacacgccgcat 379864  T
Q  230 aa 231  Q
    ||    
T  379863 aa 379862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 23728661 - 23728765
Alignment:
Q  127 aagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccg 226  Q
    |||||||||| ||| ||||||| || |||  |||| | ||| |||||||| || ||||||||||||||| ||||||| ||  | ||||||||||  ||||    
T  23728661 aagggagcacaccagcttgcgtgcatcgtgtcacacaggagtgcgccttcacggaaggatcaccctacacgtgtcctgctctgtccctaatcacatgccg 23728760  T
Q  227 cataa 231  Q
    |||||    
T  23728761 cataa 23728765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 5246 - 5184
Alignment:
Q  169 gcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataa 231  Q
    ||||| |||||| || |||||| ||||||||||||||| || ||| |||||| ||||||||||    
T  5246 gcgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataa 5184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 11719 - 11657
Alignment:
Q  170 cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataac 232  Q
    |||| |||||| || |||||| ||||||||||||||| || ||| |||||| |||||||||||    
T  11719 cgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataac 11657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 16012288 - 16012422
Alignment:
Q  102 tacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc 201  Q
    |||||| |||||||||| | ||  ||||||| || |||| |||| || ||||||  | || | ||||||||  ||||  ||||||||||||||| ||||     
T  16012288 tacaccgccttaagacttcgcacctaagggaacatgccaacttgtgtgcaccgtgccgcacaggagcgcgctctcgcataaggatcaccctacacgtgtt 16012387  T
Q  202 ctacttcgcccctaatcacgcgccgcataactcgg 236  Q
    || || || | |||||||| |||||||||||||||    
T  16012388 ctgctccgtcactaatcacacgccgcataactcgg 16012422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 14601820 - 14601884
Alignment:
Q  91 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgt 155  Q
    |||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| ||||||    
T  14601820 gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgt 14601884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 12257039 - 12256969
Alignment:
Q  165 gagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcg 235  Q
    ||||||||| |||||||||| |||| ||||| ||||  |  |||| |||||||||| ||||||||||||||    
T  12257039 gagcgcgccatcgcgcaagggtcacactacacgtgttatgtttcgtccctaatcacacgccgcataactcg 12256969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 12731366 - 12731507
Alignment:
Q  91 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc 190  Q
    |||||||||| |||||| | ||||  |||| | ||| | |||||||| || ||| | | ||||||  |||| | ||| ||||| |||||| || ||||||    
T  12731366 gtggccaaacatacaccgcattaaagctccgcttttgaaggagcacgtcagcttacatgcaccgtgccacacaggagtgcgccctcgcgcgagaatcacc 12731465  T
Q  191 ctacatgtgtcctacttcgcccctaatcacgcgccgcataac 232  Q
     |||||||||||||||  | ||| |||||| |||||||||||    
T  12731466 ttacatgtgtcctactctgtcccaaatcacacgccgcataac 12731507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 21441 - 21533
Alignment:
Q  109 ccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc 201  Q
    ||||||| || |||| |||||||||||||||| ||||| | || |||  |||| |||||| ||||| | |||| ||||||| ||||| |||||    
T  21441 ccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctacacgtgtc 21533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 215558 - 215494
Alignment:
Q  91 gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgt 155  Q
    |||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| ||||||    
T  215558 gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgt 215494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University