View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8863_low_1 (Length: 455)
Name: NF8863_low_1
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_1 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 51850315 - 51849879
Alignment:
| Q |
1 |
accacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatcgctccattagatacaacaaagataccagtgtcaaagcaagac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51850315 |
accacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatggctccattagatacaacaaagatacaagtgtcaaagcaagac |
51850216 |
T |
|
| Q |
101 |
caactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaactgtcttcctcattgaacctggaaatcttttcactttataaacaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51850215 |
caactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaattgtcttcctcattgaacctggaaatcttttcactttataaacaaa |
51850116 |
T |
|
| Q |
201 |
actgtaaaatgatttccaatggcttgagcttcccatagtattgttagtttcagccattgaaactttaacagcgagctaaatcagatttctgagtgatgta |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51850115 |
actgtaaaatgatttccaatggcttgagcttctcatagtattgttagtttcagccattgaaactttaacagcgagctaaatcagatttctgagtgatgta |
51850016 |
T |
|
| Q |
301 |
gccattaaaagttctatttctgacagaaggtatgttacacaaggtgacaaaaaggaatattaaaaacagtagaaattgtttttattttaagaattttcca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51850015 |
gccattaaaagttctatttctgacagaaggtatgttacacaaagtgacaaaaaagaatattaaaaacagtagaaattgtttttattttaagaattttcca |
51849916 |
T |
|
| Q |
401 |
gtcacaagaaatgcttacattagaaaatagctgctgt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
51849915 |
gtcacaagaaatgcttacattagaaaatagctgctgt |
51849879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 51820765 - 51820500
Alignment:
| Q |
1 |
accacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatcgctccattagatacaacaaagataccagtgtcaaagcaagac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||||||| |
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| T |
51820765 |
accacaaccacagtcatgacagcccacatagcatttgatcctatccctttgaacaaaggttccattagatacagcaaagatactagtgctaaagcaagac |
51820666 |
T |
|
| Q |
101 |
caactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaactgtcttcctcattgaacctggaaatcttttcactttataaacaaa |
200 |
Q |
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||||||||| |||||||| | |||||||||||||||||||||||| ||||||| | | |||||| |||||||||||||||||||||||| | | || |
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| T |
51820665 |
caactttcagagaatggagtatccttcttggatcatctttgccaactttccaaatttccctcctcaccaaacctggaaatcttttcactttatcagctaa |
51820566 |
T |
|
| Q |
201 |
actgtaaaatgatttccaatggcttgagcttcccatagtattgttagtttcagccattgaaacttt |
266 |
Q |
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|||||||| |||||||||||||||||| | | ||||| |||| ||||||| |||||||||||| |
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| T |
51820565 |
actgtaaatgaatttccaatggcttgagcatgtcttagtactgttggtttcagtcattgaaacttt |
51820500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 51860762 - 51860511
Alignment:
| Q |
1 |
accacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatcgctccattagatacaacaaagataccagtgtcaaagcaagac |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||| ||||| | ||||||||||||||||| || || ||||||||||| | || |
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| T |
51860762 |
accacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatgaaacaagtgtcaaagctaaac |
51860663 |
T |
|
| Q |
101 |
caactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaactgtcttcctcattgaacctggaaatcttttcactttataaacaaa |
200 |
Q |
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|||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| |||| | ||| | |||||||||||||||||||||||| | |||| |
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| T |
51860662 |
caactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaa |
51860563 |
T |
|
| Q |
201 |
actgtaaaatgatttccaatggcttgagcttcccatagtattgttagtttca |
252 |
Q |
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|||||||||||||||||||| |||||||||| | |||||||||| |||||| |
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| T |
51860562 |
actgtaaaatgatttccaatagcttgagcttttcttagtattgttggtttca |
51860511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 59 - 230
Target Start/End: Original strand, 49809069 - 49809236
Alignment:
| Q |
59 |
gctccattagatacaacaaagataccagtgtcaaagcaagaccaactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaactgt |
158 |
Q |
| |
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||||| |||||||||||||| ||| | ||||||| | |||||||||||||||||||||||||||||||| || ||||||| |||||| || || || |
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| T |
49809069 |
gctcctttagatacaacaaaagtacaa-tgtcaaacccagaccaactttcaaagaatggaccacccttctagggtcatcttggccaacctt---aattgc |
49809164 |
T |
|
| Q |
159 |
cttcctcattgaacctggaaatcttttcactttataaacaaaactgtaaaatgatttccaatggcttgagct |
230 |
Q |
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| ||||| | ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49809165 |
catcctcgctaaacctcgaaatcttttcactttataagcaaaactgtaaaatgatttccaatggcttgagct |
49809236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 51376323 - 51376386
Alignment:
| Q |
14 |
tcatgacagcccacatagcattttcccctatccctttgaacaatcgctccattagatacaacaaa |
78 |
Q |
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|||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||| |
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| T |
51376323 |
tcatgacagcccacctagcattttccc-tatcccattgaacaatggctccattagatacaacaaa |
51376386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 51379929 - 51380024
Alignment:
| Q |
170 |
aacctggaaatcttttcactttataaacaaaactgtaaaatgatttccaatggcttgagcttcccatagtattgttagtttcagccattgaaacttt |
266 |
Q |
| |
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||||||||||||||| ||||||| || ||| ||||||| |||||||||||||||||||||||| || |||||| |||| ||||||||||||||| |
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| T |
51379929 |
aacctggaaatcttt-cactttacaagcaatactgtaattggatttccaatggcttgagcttcccttatgattgttggttttagccattgaaacttt |
51380024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 51379822 - 51379873
Alignment:
| Q |
2 |
ccacaaccacagtcatgacagcccacatagcattttcccctatccctttgaa |
53 |
Q |
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||||||| |||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
51379822 |
ccacaactacagtcatgacagcccacatggcatttttcccaatccctttgaa |
51379873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 372
Target Start/End: Complemental strand, 51820441 - 51820404
Alignment:
| Q |
335 |
ttacacaaggtgacaaaaaggaatattaaaaacagtag |
372 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
51820441 |
ttacacaaggtgacaagaaggaatattaaaaacagtag |
51820404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 4721 - 4470
Alignment:
| Q |
1 |
accacaaccacagtcatgacagcccacatagcattttcccctatccctttgaacaatcgctccattagatacaacaaagataccagtgtcaaagcaagac |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||| ||||| | ||||||||||||||||| || || ||||||||||| | || |
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| T |
4721 |
accacaaccacagtcatgacagcaacaacagcattttttcctatccctttgtacaatggttccattagatacaacaatgaaacaagtgtcaaagctaaac |
4622 |
T |
|
| Q |
101 |
caactttcaaagaatggaccacccttcttggatcatctttgccaacattccaaactgtcttcctcattgaacctggaaatcttttcactttataaacaaa |
200 |
Q |
| |
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|||||||||| ||||| ||||| |||||||||||||||||||||| ||||||| |||| | ||| | |||||||||||||||||||||||| | |||| |
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| T |
4621 |
caactttcaatgaatgaaccacttttcttggatcatctttgccaactttccaaattgtccttttcactaaacctggaaatcttttcactttatcagcaaa |
4522 |
T |
|
| Q |
201 |
actgtaaaatgatttccaatggcttgagcttcccatagtattgttagtttca |
252 |
Q |
| |
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|||||||||||||||||||| |||||||||| | |||||||||| |||||| |
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|
| T |
4521 |
actgtaaaatgatttccaatagcttgagcttttcttagtattgttggtttca |
4470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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