View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8863_low_10 (Length: 239)
Name: NF8863_low_10
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 6206514 - 6206319
Alignment:
| Q |
17 |
aagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnn |
116 |
Q |
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| T |
6206514 |
aagaggagctggacacatggttccaactgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaatt---aaaa |
6206418 |
T |
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| Q |
117 |
tcttaagtctattcagtgtatcaataaaatttatgtgaaaaatt------------tacaataattcatcaaaatatgtgtgctccatttctaaattat |
203 |
Q |
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| T |
6206417 |
tcttaagtctattcagtgtatcaataaaatttatgtgaaaaatttgacgagtttcatacaataattcatcaaaatatgtgtgctctatttctaaattat |
6206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 6214264 - 6214087
Alignment:
| Q |
17 |
aagaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaattnnnnnnn |
116 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6214264 |
aagaggagctgggcacatggttccaactgaccaaccataccgagcactaaccgtgatctcatctttccttcttggacaacttcctcctcaattaaaatct |
6214165 |
T |
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| Q |
117 |
tcttaagtctattcagtgtatcaataaaatttatgtgaaaaatttacaataattcatcaaaatatgtgtgctccattt |
194 |
Q |
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| T |
6214164 |
taattagtctattcagtgtatcaataaaatgtatgtgaacaatttacaataattcatcaaaatatgtgtgctctattt |
6214087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 6176700 - 6176609
Alignment:
| Q |
18 |
agaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
109 |
Q |
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| T |
6176700 |
agaggagctggacacatggttccaagtgaccaaccataccgagcactaaccatgatctcatctttccttcttggacaacttcctcctcaatt |
6176609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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