View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8863_low_11 (Length: 237)

Name: NF8863_low_11
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8863_low_11
NF8863_low_11
[»] chr5 (3 HSPs)
chr5 (18-219)||(4939303-4939504)
chr5 (72-109)||(6604413-6604450)
chr5 (72-109)||(32902859-32902896)
[»] chr4 (2 HSPs)
chr4 (18-56)||(16412273-16412311)
chr4 (72-109)||(22210809-22210846)
[»] chr2 (1 HSPs)
chr2 (72-109)||(9373485-9373522)
[»] chr7 (1 HSPs)
chr7 (73-109)||(19512751-19512787)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 4939504 - 4939303
Alignment:
Q  18 tagattcattgaataatcgatatatttgttctagaatattagacatgatatatctaattattcaatgaatttaaaaagataattgtttcttacttaattt 117  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4939504 tagattcattgaataatcgatgtatttgttctagaatattagacatgatatatataattattcaatgaatttaaaaagataattgtttcttacttaattt 4939405  T
Q  118 cttttgttcctaatcacaaacccatgtggaaattttgaatttcgttcacatacagggttgctttgtttatgtgattgataatctaaaacctgaatgaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4939404 cttttgttcctaatcacaaacccatgtggaaattttgaatttcgttcacatacagggttgctttgtttatgtgattgataatctaaaacctgaatgaaaa 4939305  T
Q  218 ac 219  Q
    ||    
T  4939304 ac 4939303  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 6604413 - 6604450
Alignment:
Q  72 taattattcaatgaatttaaaaagataattgtttctta 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  6604413 taattattcaatgaatttaaaaagtcaattgtttctta 6604450  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 32902859 - 32902896
Alignment:
Q  72 taattattcaatgaatttaaaaagataattgtttctta 109  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  32902859 taattattcaatgaatttaaaaagacaattttttctta 32902896  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 16412273 - 16412311
Alignment:
Q  18 tagattcattgaataatcgatatatttgttctagaatat 56  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  16412273 tagattcattgaataattgatatatttggtctagaatat 16412311  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 22210846 - 22210809
Alignment:
Q  72 taattattcaatgaatttaaaaagataattgtttctta 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  22210846 taattattcaatgaatttaaaaagtcaattgtttctta 22210809  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 9373485 - 9373522
Alignment:
Q  72 taattattcaatgaatttaaaaagataattgtttctta 109  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  9373485 taattattcaatgaatttaaaaagtcaattgtttctta 9373522  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 19512787 - 19512751
Alignment:
Q  73 aattattcaatgaatttaaaaagataattgtttctta 109  Q
    |||||||||||||||||||||||  ||||||||||||    
T  19512787 aattattcaatgaatttaaaaagtcaattgtttctta 19512751  T

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