View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8863_low_4 (Length: 409)
Name: NF8863_low_4
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 385952 - 385550
Alignment:
| Q |
1 |
ttggaatccgaacataccacttctttaattgggcactttggtctttcttcctgcatatataggttttatttggaactccatgagtggttttattcgtgac |
100 |
Q |
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| T |
385952 |
ttggaatccgtccataccacttctttaattgggcactttggtctttcttcctgcata----ggtcttatttggaactccataagtgattttattcgtgac |
385857 |
T |
|
| Q |
101 |
ttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgtggttagaggttgacgagtgacttgggtatcaattttctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
385856 |
ttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgtggttagaggttgacgggtaacttgggtatcaattttctta |
385757 |
T |
|
| Q |
201 |
tagttgagatggactttctcccaatggtgggaatggtggagtttcgtcaatttcaaaatcatcatcttttacctcttctccaatagatgctatatcttat |
300 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
385756 |
tagttgagatggactttctcctgatggtgggaatggtggagtttcgtcaatttcaaaatcatcatcttttacctcttctccaatagatgatatatcttat |
385657 |
T |
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| Q |
301 |
ggatcatggtcactaaaagtataagatcaa-------------------aatcaatgtgttgataagcttgcaaacttgggtcatggaggagattttggc |
381 |
Q |
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| T |
385656 |
ggatcatggtcactaaaagtgtaagatcaagcatgtttatcggaaagttaatcaatgtgttgataagcttgcaaacttgggtcatggaggagattttggt |
385557 |
T |
|
| Q |
382 |
ttggtgg |
388 |
Q |
| |
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| T |
385556 |
ttggtgg |
385550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 283
Target Start/End: Original strand, 28559237 - 28559459
Alignment:
| Q |
61 |
aggttttatttggaactccatgagtggttttattcgtgacttcacttgtaatcttgatcgttttacttcagttatgactgagctttggggtcttgtttgt |
160 |
Q |
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|||| ||||| |||||| |||| || ||||||| | || ||||| ||||| |||| ||| |||||||| |||||| |||| ||||||||||||||| | |
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| T |
28559237 |
aggtcttattaggaacttcatgggttgttttatacctggtttcacgtgtaaccttggtcgatttacttcggttatggctgaactttggggtcttgttcat |
28559336 |
T |
|
| Q |
161 |
ggttagaggttgacgagtgacttgggtatcaattttcttatagttgagatggactttctcccaatggtgggaatggtggagtttcgtcaatttcaaaatc |
260 |
Q |
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|||| ||||||| | || || |||||||||||||| ||||||| |||||||||| |||| | |||||||||||||| ||| ||| ||| |||||||| |
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| T |
28559337 |
ggtttgaggttggcatgtaacctgggtatcaatttttttatagtagagatggactatctcacggtggtgggaatggtgaagtctcgaaaatctcaaaatc |
28559436 |
T |
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| Q |
261 |
atcatcttttacctcttctccaa |
283 |
Q |
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| |||||||||||||||||||| |
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| T |
28559437 |
aaaatcttttacctcttctccaa |
28559459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 28559537 - 28559583
Alignment:
| Q |
342 |
tgataagcttgcaaacttgggtcatggaggagattttggcttggtgg |
388 |
Q |
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| T |
28559537 |
tgataagcttgcaaacttaggtcatggaggagattttggcttggtgg |
28559583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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