View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8863_low_6 (Length: 347)
Name: NF8863_low_6
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 33988720 - 33989042
Alignment:
| Q |
16 |
acaacattctacattgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33988720 |
acaacattctacattgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaag |
33988819 |
T |
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| Q |
116 |
cactaatggactaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33988820 |
cactaatggactaagcaatgattcagcttcagcttctgccattacaaattctcctactctttgcagaaaaagccatgtttataacaacaatacaagttat |
33988919 |
T |
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| Q |
216 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatcattgcttagctttcagcatagtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33988920 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatcattgcttagctttcagcatagtt |
33989019 |
T |
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| Q |
316 |
ggatggtttccaatgagaataat |
338 |
Q |
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||||||||||||||||||||||| |
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| T |
33989020 |
ggatggtttccaatgagaataat |
33989042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 6835087 - 6834927
Alignment:
| Q |
29 |
ttgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcact-----aatg |
123 |
Q |
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| T |
6835087 |
ttgtgtttttgatgagactgctatggatattaactcagtaatgtctcaaaaaaaatctatgattgaagaagaagatggtccacaaagcactaatgtaatg |
6834988 |
T |
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| Q |
124 |
gactaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaa |
185 |
Q |
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| T |
6834987 |
gactaagcaatgattcagcttcagcttctgccatta-aaattctcctactctatgcagaaaa |
6834927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 216 - 293
Target Start/End: Complemental strand, 6834922 - 6834845
Alignment:
| Q |
216 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
293 |
Q |
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| T |
6834922 |
gaacttgaagaagagtctttgattaatttcaaaggcaatgatgaatattacaacaacctcatgcaaggtagtgaatca |
6834845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 7275347 - 7275083
Alignment:
| Q |
29 |
ttgtgtttttgatgag---actactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
125 |
Q |
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|||||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7275347 |
ttgtgtttttgatgagtagactgctatggatattaactcagtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatgga |
7275248 |
T |
|
| Q |
126 |
ctaagcaatgattcagcttcagcttctgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttatgaacttgaag |
225 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| |
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| T |
7275247 |
ctaagcaatgattcagcttcagcttctgcaattacaaattctcctactctatgcagaaaagggcatgtttataacaac---acaagttatgaacttgaag |
7275151 |
T |
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| Q |
226 |
aagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
293 |
Q |
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| T |
7275150 |
aagagtctttgattaatttcaaacgcaatgatgaatattacaagaacctcatgcaaggtagtgaatca |
7275083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 29 - 293
Target Start/End: Complemental strand, 33129035 - 33128771
Alignment:
| Q |
29 |
ttgtgtttttgatgagactactatggagattaactctgtaatgtctcataaaaaatctatgattgaagaagaagatggttcacaaagcactaatggacta |
128 |
Q |
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|||||||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33129035 |
ttgtgtttttgaggagactactatggatattaactcaacagtgtctcataaaaaatatatgattgaagaagaag---gttcacaaagcactaatggacta |
33128939 |
T |
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| Q |
129 |
agcaatgattcagcttcagcttc------tgccattacaaattctcctactctatgcagaaaaagccatgtttataacaacaatacaagttatgaacttg |
222 |
Q |
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||||||||||||||||||||||| |||||||||||| || |||||||||||||||||| | |||||||||| ||||| ||||||||||||||| |
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| T |
33128938 |
agcaatgattcagcttcagcttcagcttctgccattacaaactcacctactctatgcagaaaagggcatgtttatagcaaca---caagttatgaacttg |
33128842 |
T |
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| Q |
223 |
aagaagagtctttgattaatttcaaaggcaatgatgagtattacaacaacctcatgcaaggtagtgaatca |
293 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33128841 |
aagaagagtttttgattaatttcaaaggcaatgatggatattacaacaacctcatgcaaggtagtgaatca |
33128771 |
T |
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