View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8863_low_8 (Length: 268)
Name: NF8863_low_8
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30759936 - 30760168
Alignment:
| Q |
1 |
tcaatttttgtggaaaactggcgactttgtgttattcttaaatcatgaccgtcttatttacctaatacgttgtgatgcatttgatttaacaaaaaaccaa |
100 |
Q |
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| T |
30759936 |
tcaatttttgtggaaaactggcgactttgtgttattcctaaatcatgaccgtcttatttacctaatacgttgtgatgcatttgatttaccaaaaaaacaa |
30760035 |
T |
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| Q |
101 |
aagctatgaatgttttagttcctatatataagtcttgcgtgttttaaacagttattatgtaattaatgtttgtatacgattggttcttgaatcggatgcc |
200 |
Q |
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| T |
30760036 |
aaactatgaatgttttagttcctatttataagtcttgtgtgttttaaacagttattatgtaattaatgtttgtatacgattggttcttgaatcggatgcc |
30760135 |
T |
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| Q |
201 |
gaatttttgagaaaaaatgtttgtatatgattatt |
235 |
Q |
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| T |
30760136 |
gagtttt--cgaaaaaatgtttatatatgattatt |
30760168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 30748158 - 30748202
Alignment:
| Q |
222 |
tgtatatgattattgataaattgagcaatgttctttgaacataaa |
266 |
Q |
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| T |
30748158 |
tgtatatgattattgataaattgagtaatgttatttaaacataaa |
30748202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 30769609 - 30769653
Alignment:
| Q |
222 |
tgtatatgattattgataaattgagcaatgttctttgaacataaa |
266 |
Q |
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||||||||||||||||||||||||| |||||| ||| |||||||| |
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| T |
30769609 |
tgtatatgattattgataaattgagtaatgttatttaaacataaa |
30769653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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