View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8863_low_9 (Length: 262)
Name: NF8863_low_9
Description: NF8863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8863_low_9 |
 |  |
|
| [»] scaffold0002 (1 HSPs) |
 |  |  |
|
| [»] scaffold0479 (1 HSPs) |
 |  |  |
|
| [»] scaffold0464 (1 HSPs) |
 |  |  |
|
| [»] scaffold0092 (1 HSPs) |
 |  |  |
|
| [»] scaffold0005 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34064573 - 34064329
Alignment:
| Q |
1 |
ttgagaaatgatgtttatacaactatataataacaattttttggacaactcttcttct---actctcaaataatatatgttatggaccggtcagtggcca |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34064573 |
ttgagaaatgatgtttatacaactatataatgacaattttttggacaactcttcttctcgtactctcaaataatatatgttatggaccggtcagtggccg |
34064474 |
T |
 |
| Q |
98 |
aacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatg |
197 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||||||| |||| |||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
34064473 |
aacttacacctccttaagactccacacttaaggaagcacgccatcttgcgtaca-cgtaccacacaggagcgcgccttcgcgcaaggatcaccatacatg |
34064375 |
T |
 |
| Q |
198 |
tgtcctacttcgcccctaatcacgcgccgcataactcggtgacggt |
243 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
34064374 |
tgtcctacttcgcccctaatcacgtgccgcataacccggtgacggt |
34064329 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 220
Target Start/End: Original strand, 19730405 - 19730525
Alignment:
| Q |
99 |
acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt |
198 |
Q |
| |
|
|||| |||||||| ||||||| || ||||||||||| |||| ||||||| |||| || |||||| ||| | ||||||||||||| |||||||||||| | |
|
|
| T |
19730405 |
acttgcaccacctcgagactcctcacttaagggagcatgcca-cttgcgtgcaccatatcacataggagtgtgccttcgcgcaagtatcaccctacatat |
19730503 |
T |
 |
| Q |
199 |
gtcctacttcgcccctaatcac |
220 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
19730504 |
ttcctgcttcgccccaaatcac |
19730525 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 19723361 - 19723457
Alignment:
| Q |
99 |
acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctaca |
195 |
Q |
| |
|
||||||||| ||| |||||||| || ||||| |||||||||| | ||| |||| || |||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
19723361 |
acttacaccgcctcaagactccgcacttaagagagcacgccagcccacgtgcaccataccacacaggagcgcgccttcaagcaaggatcaccctaca |
19723457 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 9403450 - 9403335
Alignment:
| Q |
99 |
acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt |
198 |
Q |
| |
|
|||| |||| ||| ||||||| ||| |||||||| || |||| ||||||| |||| | |||| | ||||||||||| | |||||| ||||||||| || |
|
|
| T |
9403450 |
acttgcaccgcctcaagactctacacttaagggaacatgccagcttgcgtgcaccatgccacacaaaagcgcgccttcacacaaggaccaccctacacgt |
9403351 |
T |
 |
| Q |
199 |
gtcctacttcgcccct |
214 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
9403350 |
gtcctgcttcgtccct |
9403335 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 12449472 - 12449517
Alignment:
| Q |
175 |
tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcac |
220 |
Q |
| |
|
||||||||||||||||||| | ||| |||||| ||||||||||||| |
|
|
| T |
12449472 |
tcgcgcaaggatcaccctagacgtggcctactccgcccctaatcac |
12449517 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 22866047 - 22865918
Alignment:
| Q |
91 |
gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc |
190 |
Q |
| |
|
|||||||||||| |||| ||| |||||||| || |||||||||||||||| ||||||| ||| | |||||| ||| |||||||||||||||||||||| |
|
|
| T |
22866047 |
gtggccaaactttcaccgcctcaagactccgcacttaagggagcacgccagcttgcgtgcactattccacataagagtgcgccttcgcgcaaggatcacc |
22865948 |
T |
 |
| Q |
191 |
ctacatgtgtcctacttcgcccctaatcac |
220 |
Q |
| |
|
||||| ||||| | || || |||||||||| |
|
|
| T |
22865947 |
ctacacgtgtcatgctccgtccctaatcac |
22865918 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 24546604 - 24546476
Alignment:
| Q |
115 |
gactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccct |
214 |
Q |
| |
|
|||||| || |||||||||||||||| ||||||| |||||| |||| | |||||| ||| |||||||||||||||||||| ||||| | || || |||| |
|
|
| T |
24546604 |
gactccgcacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctccgtccct |
24546505 |
T |
 |
| Q |
215 |
aatcacgcgccgcataactcggtgacggt |
243 |
Q |
| |
|
|||||| ||||||||||| ||| |||||| |
|
|
| T |
24546504 |
aatcacacgccgcataacccggagacggt |
24546476 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 25828877 - 25828944
Alignment:
| Q |
175 |
tcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacgg |
242 |
Q |
| |
|
||||||||||||| ||||||| |||||||| | ||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
25828877 |
tcgcgcaaggatcgccctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacgg |
25828944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 220
Target Start/End: Complemental strand, 25537671 - 25537562
Alignment:
| Q |
111 |
ttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgc |
210 |
Q |
| |
|
|||||||||| || |||||||||||| ||| | ||||||||| | |||||| |||| |||| |||||||||||| |||||| | || |||| |||| |
|
|
| T |
25537671 |
ttaagactccgcacttaagggagcacaccagcacgcgtacaccatgccacataggagctcgccctcgcgcaaggattaccctatacgtttcctgattcgt |
25537572 |
T |
 |
| Q |
211 |
ccctaatcac |
220 |
Q |
| |
|
|||||||||| |
|
|
| T |
25537571 |
ccctaatcac |
25537562 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 92 - 243
Target Start/End: Original strand, 13291929 - 13292080
Alignment:
| Q |
92 |
tggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccc |
191 |
Q |
| |
|
||||| ||||| |||| ||| ||| |||| ||| ||||| ||||||||| ||||||| ||||| |||| | ||||||||||||||||||||||||||| |
|
|
| T |
13291929 |
tggccgaacttgcaccgcctcaaggctccgcatctaaggaagcacgccagcttgcgtgaaccgtgccacacaggagcgcgccttcgcgcaaggatcaccc |
13292028 |
T |
 |
| Q |
192 |
tacatgtgtcctacttcgcccctaatcacgcgccgcataactcggtgacggt |
243 |
Q |
| |
|
|||| ||||| | || || |||||| ||| ||||||||||| ||| |||||| |
|
|
| T |
13292029 |
tacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggt |
13292080 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 16986897 - 16987037
Alignment:
| Q |
91 |
gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc |
190 |
Q |
| |
|
|||| ||||||| |||| ||||||| |||| | | | | ||||||||||| || || | |||||| |||||| ||| | ||| |||| ||||||||||| |
|
|
| T |
16986897 |
gtggtcaaacttgcaccgccttaaggctccgcgtctgaaggagcacgccaactcgcatgcaccgtgccacataggagtgtgccctcgcacaaggatcacc |
16986996 |
T |
 |
| Q |
191 |
ctacatgtgtcctacttcgcccctaatcacgcgccgcataa |
231 |
Q |
| |
|
|| || ||||||| || | |||||||||| | |||||||| |
|
|
| T |
16986997 |
ctgcacgtgtcctgctccatccctaatcacacaccgcataa |
16987037 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 19290753 - 19290656
Alignment:
| Q |
90 |
agtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatc |
187 |
Q |
| |
|
||||||| |||||||||||||| ||| ||||||||| || ||||||||| ||||||||| |||||| |||| | |||||||||| |||||||||||| |
|
|
| T |
19290753 |
agtggcctaacttacaccacctcaaggctccacattcaaaggagcacgcaatcttgcgtgcaccgtgccacacaggagcgcgcctccgcgcaaggatc |
19290656 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 235
Target Start/End: Complemental strand, 15825359 - 15825296
Alignment:
| Q |
172 |
ccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcg |
235 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || || ||| ||| |||||||||||||| |
|
|
| T |
15825359 |
ccttcgcacaaggatcaccctacatgtgtcctactccgtccttaaacacacgccgcataactcg |
15825296 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 19050248 - 19050381
Alignment:
| Q |
99 |
acttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgt |
198 |
Q |
| |
|
||||||||| |||||||||||| || || |||||||| || | || |||| |||| || |||| | ||||||||||| |||||| |||||||||||| | |
|
|
| T |
19050248 |
acttacaccgccttaagactccgcactttagggagcaagcgacctcgcgtgcaccataccacacaggagcgcgcctttgcgcaaagatcaccctacacat |
19050347 |
T |
 |
| Q |
199 |
gtcctacttcgcccctaatcacgcgccgcataac |
232 |
Q |
| |
|
||||| || | |||||||| ||||||||||| |
|
|
| T |
19050348 |
gtcctgctccatgcctaatcatacgccgcataac |
19050381 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 29743947 - 29744035
Alignment:
| Q |
131 |
gagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatca |
219 |
Q |
| |
|
|||||||||| ||||||| |||||| |||| |||||||| |||||| |||||||||||||| ||||||| || || ||||||||| |
|
|
| T |
29743947 |
gagcacgccagcttgcgtgcaccgtgccacacgggagcgcgctctcgcgctaggatcaccctacacgtgtcctgctccgtccctaatca |
29744035 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 18136078 - 18136019
Alignment:
| Q |
170 |
cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcat |
229 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | || |||||||||| || ||||| |
|
|
| T |
18136078 |
cgccgtcgcgcaaggatcaccctacatgtgtcctgcaccgtccctaatcacacgtcgcat |
18136019 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 29138103 - 29138043
Alignment:
| Q |
176 |
cgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcgg |
236 |
Q |
| |
|
||||| ||||| |||||||| |||| ||||| || |||||||||| ||| ||||||||||| |
|
|
| T |
29138103 |
cgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcgg |
29138043 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 379963 - 379862
Alignment:
| Q |
130 |
ggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcat |
229 |
Q |
| |
|
|||||| |||| ||||||| |||||| |||| | |||||||||||| | |||||||||||||| ||||||| || || || ||||||| |||||||| |
|
|
| T |
379963 |
ggagcatgccagcttgcgtgcaccgtgccacacaggagcgcgccttcacaagaggatcaccctacacgtgtcctgctccgtccataatcacacgccgcat |
379864 |
T |
 |
| Q |
230 |
aa |
231 |
Q |
| |
|
|| |
|
|
| T |
379863 |
aa |
379862 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 23728661 - 23728765
Alignment:
| Q |
127 |
aagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccg |
226 |
Q |
| |
|
|||||||||| ||| ||||||| || ||| |||| | ||| |||||||| || ||||||||||||||| ||||||| || | |||||||||| |||| |
|
|
| T |
23728661 |
aagggagcacaccagcttgcgtgcatcgtgtcacacaggagtgcgccttcacggaaggatcaccctacacgtgtcctgctctgtccctaatcacatgccg |
23728760 |
T |
 |
| Q |
227 |
cataa |
231 |
Q |
| |
|
||||| |
|
|
| T |
23728761 |
cataa |
23728765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 231
Target Start/End: Complemental strand, 5246 - 5184
Alignment:
| Q |
169 |
gcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataa |
231 |
Q |
| |
|
||||| |||||| || |||||| ||||||||||||||| || ||| |||||| |||||||||| |
|
|
| T |
5246 |
gcgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataa |
5184 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 11719 - 11657
Alignment:
| Q |
170 |
cgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataac |
232 |
Q |
| |
|
|||| |||||| || |||||| ||||||||||||||| || ||| |||||| ||||||||||| |
|
|
| T |
11719 |
cgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataac |
11657 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 236
Target Start/End: Original strand, 16012288 - 16012422
Alignment:
| Q |
102 |
tacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc |
201 |
Q |
| |
|
|||||| |||||||||| | || ||||||| || |||| |||| || |||||| | || | |||||||| |||| ||||||||||||||| |||| |
|
|
| T |
16012288 |
tacaccgccttaagacttcgcacctaagggaacatgccaacttgtgtgcaccgtgccgcacaggagcgcgctctcgcataaggatcaccctacacgtgtt |
16012387 |
T |
 |
| Q |
202 |
ctacttcgcccctaatcacgcgccgcataactcgg |
236 |
Q |
| |
|
|| || || | |||||||| ||||||||||||||| |
|
|
| T |
16012388 |
ctgctccgtcactaatcacacgccgcataactcgg |
16012422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 14601820 - 14601884
Alignment:
| Q |
91 |
gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgt |
155 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| |||||| |
|
|
| T |
14601820 |
gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgt |
14601884 |
T |
 |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 12257039 - 12256969
Alignment:
| Q |
165 |
gagcgcgccttcgcgcaaggatcaccctacatgtgtcctacttcgcccctaatcacgcgccgcataactcg |
235 |
Q |
| |
|
||||||||| |||||||||| |||| ||||| |||| | |||| |||||||||| |||||||||||||| |
|
|
| T |
12257039 |
gagcgcgccatcgcgcaagggtcacactacacgtgttatgtttcgtccctaatcacacgccgcataactcg |
12256969 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 232
Target Start/End: Original strand, 12731366 - 12731507
Alignment:
| Q |
91 |
gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcacc |
190 |
Q |
| |
|
|||||||||| |||||| | |||| |||| | ||| | |||||||| || ||| | | |||||| |||| | ||| ||||| |||||| || |||||| |
|
|
| T |
12731366 |
gtggccaaacatacaccgcattaaagctccgcttttgaaggagcacgtcagcttacatgcaccgtgccacacaggagtgcgccctcgcgcgagaatcacc |
12731465 |
T |
 |
| Q |
191 |
ctacatgtgtcctacttcgcccctaatcacgcgccgcataac |
232 |
Q |
| |
|
||||||||||||||| | ||| |||||| ||||||||||| |
|
|
| T |
12731466 |
ttacatgtgtcctactctgtcccaaatcacacgccgcataac |
12731507 |
T |
 |
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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 201
Target Start/End: Original strand, 21441 - 21533
Alignment:
| Q |
109 |
ccttaagactccacatttaagggagcacgccatcttgcgtacaccgtagcacatatgagcgcgccttcgcgcaaggatcaccctacatgtgtc |
201 |
Q |
| |
|
||||||| || |||| |||||||||||||||| ||||| | || ||| |||| |||||| ||||| | |||| ||||||| ||||| ||||| |
|
|
| T |
21441 |
ccttaaggctacacacttaagggagcacgccaacttgcatgcatcgtgccacacatgagcacgcctcctcgcagggatcacgctacacgtgtc |
21533 |
T |
 |
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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 215558 - 215494
Alignment:
| Q |
91 |
gtggccaaacttacaccaccttaagactccacatttaagggagcacgccatcttgcgtacaccgt |
155 |
Q |
| |
|
|||||| |||||||||| ||||| |||||| || | || ||||||||||| ||||||| |||||| |
|
|
| T |
215558 |
gtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgt |
215494 |
T |
 |
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