View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_high_1 (Length: 697)
Name: NF8864_high_1
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 607
Target Start/End: Original strand, 37615680 - 37616267
Alignment:
| Q |
16 |
atcaatttactcgatctgtacttttacagtaacaaaagtagttgttaaggcctcgtaagccttaacattctagccacaaatgtgaagcaaaatactattc |
115 |
Q |
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| T |
37615680 |
atcaatttactcgatctgtacttttacagtaacaaaagtagttgttaaggcctcgtaagccttaacattctagccacaaatgtgaagcaaaatactattc |
37615779 |
T |
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| Q |
116 |
aaaacattgcttg---tcatcatgtcaacattaagtattgctcaacaatatcattaataaaatgtccctaacatgagtaaatgctagaaaactagtagtt |
212 |
Q |
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| T |
37615780 |
aaaacattgcttgacgtcatcatgtcaacattaagtattgctcaacaatatcattaataaaatgtccctaacatgagtaaatgctagaaaactagtagtt |
37615879 |
T |
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| Q |
213 |
gtgtgtggtatggcaatttcattgacagactcattttcaaatattgtgcatcacgttgacaagatagacaaagatgctttcaaactactcttttgatcaa |
312 |
Q |
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| T |
37615880 |
gtgtgtggtatggcaatttcattgacagactcattttcaaatattgtgcatcacgttgacaagatagacaaagatactttcgaactactcttttgatcaa |
37615979 |
T |
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| Q |
313 |
tgtataagataaacttgattggagagtcaagaggagataaatgaaaagttacagatatcgtaacaagcctaggaaatacatgatttccagtttccaccat |
412 |
Q |
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| T |
37615980 |
tctataagataaacttgattggagagtcaagaggagataaataaaaagttagagatatggtaacaagcctaggaaatacatga-------tttccaccat |
37616072 |
T |
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| Q |
413 |
ggtatagaagtaagacaaattattatgcaagccaggtctaccgatccacaaaaaacaaaattaaaacaataatgtaaatggagaacatgtgattcaacaa |
512 |
Q |
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| T |
37616073 |
gttatagaagtaagacaaattattatgcaagccaggtctaccgatccacaaaaaacaaaattaaaaaaataatgtaaatggagaacatgtgattcaacaa |
37616172 |
T |
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| Q |
513 |
atcttaacttttgagtctatcatagaaagttatagggagataaaagcagatattcacaggatccaaatagtatggatgaaataaaggaatgctat |
607 |
Q |
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| T |
37616173 |
atcttaacttttgagtctatcatagaaagttatagggagataaaagcagatattcacaggatccaaatagtatggatgaaataaaggaatgctat |
37616267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 609 - 684
Target Start/End: Original strand, 37616319 - 37616394
Alignment:
| Q |
609 |
ttttgcaaaatcacaatggatcgcggtgattctgatatactcaccgtgatacgaaacgtacattaaatattgagta |
684 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
37616319 |
ttttgcaaaattacgatggatcgcggtgattctgatatactcaccgtgatattaaacgtacattaaatattaagta |
37616394 |
T |
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