View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_high_11 (Length: 234)
Name: NF8864_high_11
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8139049 - 8138835
Alignment:
| Q |
1 |
agaactgttacggaagaataatttttcccattannnnnnnncttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttg |
100 |
Q |
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| T |
8139049 |
agaactgttacggaagaataatttttcccattattttttttcttagcattcgaaatagagatcaaatagttttaattttgatttattataatagattttg |
8138950 |
T |
|
| Q |
101 |
attttgatacatttacttaaaacggattgtacgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8138949 |
attttgatacatttacttaaaacggattgtacgaaaaataaatttgatcataacaatttgactttcaaatcaagttgcaagttggcatatgaagacatgt |
8138850 |
T |
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| Q |
201 |
gcatcccatccttct |
215 |
Q |
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|||||| |||||||| |
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| T |
8138849 |
gcatccaatccttct |
8138835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 7670694 - 7670824
Alignment:
| Q |
83 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
179 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
7670694 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7670793 |
T |
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| Q |
180 |
agttggcatatgaagacatgtgcatcccatc |
210 |
Q |
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| T |
7670794 |
agttggcatatgaaggcatgtgcatcccatc |
7670824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 7708916 - 7709046
Alignment:
| Q |
83 |
ttattataatagattttgattttgatacatttactt-aaaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgca |
179 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
7708916 |
ttattataatagattttgattttgatacatttacttaaaaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgca |
7709015 |
T |
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| Q |
180 |
agttggcatatgaagacatgtgcatcccatc |
210 |
Q |
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| T |
7709016 |
agttggcatatgaaggcatgtgcatcccatc |
7709046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 7709614 - 7709522
Alignment:
| Q |
120 |
aaacggattgtacgaaaaataaatttgatcataacaatttgactttc-aaatcaag-ttgcaagttggcatatgaagacatgtgcatcccatc |
210 |
Q |
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||||||| | ||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
7709614 |
aaacggaatatacaaaaaataaatttgatcataacaattggactttcaaaatcaagattgcaagttggcatatgaaggcatgtgcatcccatc |
7709522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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