View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_high_2 (Length: 694)
Name: NF8864_high_2
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 8176393 - 8176701
Alignment:
| Q |
18 |
gcctcaacccacatcatagatccaatgcatgactacacattaatcgataatccgtgtcattcaagaaaacatagaagacttcatgcgtgcctcactgcac |
117 |
Q |
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| T |
8176393 |
gcctcaacccacatcacaaatccaatgcatgactacacattaaccgataatccacgtcattcaagaaaacatagaagatttcatgcgtgcctcactgcac |
8176492 |
T |
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| Q |
118 |
agaagcgcatctcatccaacctgcaccactcatatgatctcaaacaatctcctgcatatctcgtcg-ggcattacatagttagttacatttgtgctatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
8176493 |
agaagcgcatctcatccaacctgcaccactcatatgatctcaaacaatctcctgcatatctcgtcgccgcattacatagttagttacagttgtgctatgc |
8176592 |
T |
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| Q |
217 |
tatataagtgtggctccacgccacacttgagatacgatgacattttcaccacttttcgcacactttccttcctcattttattaacttgagcgtcttagtg |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |
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| T |
8176593 |
tatataagtgtggctccacgccacacttgaggtacgatgacattttcaccacttttcgcacactttccttcctcatttcattaacttgagcatcttaatg |
8176692 |
T |
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| Q |
317 |
ctaactcta |
325 |
Q |
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||||||||| |
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| T |
8176693 |
ctaactcta |
8176701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 326 - 501
Target Start/End: Original strand, 8176807 - 8176983
Alignment:
| Q |
326 |
agattactcaacaactcataagtgtgaagacaaactcgctagaattgaaaagaaaatcaaatgatctctctcatttataaagaggtgcaatttattttaa |
425 |
Q |
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| T |
8176807 |
agattactcaacaactcataagtgtgaagacaaactcgctagaattgaaaagaaaatcgaatgatctctctcatttataaagaggtgcaatttattttaa |
8176906 |
T |
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| Q |
426 |
aacttaaaactgatattcctataacaccaaatacaact-aaatactaactaaacaacagagggaatttcatctgtcc |
501 |
Q |
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| T |
8176907 |
aacttaaaactgatattcctataacaccaaatacaactaaaatactaactaaacaacagagggaatttcatctgtcc |
8176983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 553 - 687
Target Start/End: Original strand, 8177035 - 8177169
Alignment:
| Q |
553 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
652 |
Q |
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| T |
8177035 |
cctttctgagcataccctctttatggaaccctaccttttccaacaccctctgagaagctatgttctgtagaacagtataagcttgcaaccttctcaaatc |
8177134 |
T |
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| Q |
653 |
tgggaactcatggaacacttttgacagaataatct |
687 |
Q |
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| T |
8177135 |
tgggaactcatggaacacttttgacagaagaatct |
8177169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Complemental strand, 45046504 - 45046467
Alignment:
| Q |
257 |
cattttcaccacttttcgcacactttccttcctcattt |
294 |
Q |
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| T |
45046504 |
cattttcatcacttttcgcacattttccttcctcattt |
45046467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 16687675 - 16687719
Alignment:
| Q |
249 |
tacgatgacattttcaccacttttcgcacactttccttcctcattt |
294 |
Q |
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| T |
16687675 |
tacgatgacaatttcaccacttttcgcacactttcc-tcctcattt |
16687719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 611
Target Start/End: Original strand, 25503279 - 25503336
Alignment:
| Q |
554 |
ctttctgagcataccctctttatggaaccctaccttttccaacaccctttgagaagct |
611 |
Q |
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||||||||| |||||||| || ||||||| ||||||||||| ||||| ||||||||| |
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| T |
25503279 |
ctttctgagtataccctccctaaggaacccaaccttttccaagaccctctgagaagct |
25503336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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