View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_low_11 (Length: 249)
Name: NF8864_low_11
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36190796 - 36191029
Alignment:
| Q |
1 |
ttatcgacaccgtgaagatggtgaaaatatgatttaatatttcctaaaaattttgtataccgtcgggatatagttattgtttttatttataaatgatgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36190796 |
ttatcgacaccgtgaagatggtgaaaatatgatttaatgtttcctaaaatttttgtatactgtcgggatatagttattgtttttatttataaatgatgta |
36190895 |
T |
|
| Q |
101 |
acatagaagaaaatcaaaccggggggcagtttctcagttggaaaaaagtttcctaccttgttatactcttgtgcacctgttataagttgcattagtttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36190896 |
acatagaagaaaatcaaaccggggggcagtttctcggttgaaaaaaagtttcctaccttgttatactgttgtgcacctgttataagttgcattagtttca |
36190995 |
T |
|
| Q |
201 |
tttcatgtttaacgggtataaacgaatcaacatt |
234 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
36190996 |
tttcatgtttagcgggtataaacgaatcaacatt |
36191029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 7764885 - 7764667
Alignment:
| Q |
15 |
aagatggtgaaaatatgatttaatatttcctaaaaattttgtataccgtcgggatatagttattgtttttatttataaatgatgtaacatagaagaaaat |
114 |
Q |
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||||||||||||||||||||| || ||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7764885 |
aagatggtgaaaatatgatttgatgttttctaaaaaatttgtatattgtcgggatatagttattgtttttatttataaatgacgtaacatagaagaaaac |
7764786 |
T |
|
| Q |
115 |
caaaccggggggcagtttctcagttggaaaaaagtttcctaccttgttatactcttgtgcacctgttataagttgcattagtttcatttcatgtttaacg |
214 |
Q |
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| T |
7764785 |
caaaccgagggt-agtttctcagttggaaaaaagtttcctaccttgctatactgttgtgcacatgttataagttgcataagtttcatttcatgtttagcg |
7764687 |
T |
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| Q |
215 |
ggtataaacgaatcaacatt |
234 |
Q |
| |
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| T |
7764686 |
gatataaacgaatcaacatt |
7764667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 20823233 - 20823278
Alignment:
| Q |
189 |
gcattagtttcatttcatgtttaacgggtataaacgaatcaacatt |
234 |
Q |
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| T |
20823233 |
gcattagtttcatttcatgtttagcgggtataaaggaatcaacatt |
20823278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20823155 - 20823227
Alignment:
| Q |
1 |
ttatcgacaccgtgaagatggtgaaaatatgatttaatatttcctaaaaattttgtataccgtcgggatatag |
73 |
Q |
| |
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| T |
20823155 |
ttatcgacactgtgaagatggtgaaaatatgattggatgttttctaaaatatttgtatattgtcaggatatag |
20823227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14410953 - 14411116
Alignment:
| Q |
1 |
ttatcgacaccgtgaagatggtgaaaatatgatttaatatttcctaaaaattttgtataccgtcgggatatagttattgtttttatttataaatgatgta |
100 |
Q |
| |
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|||||||| | ||||||||||||||| ||||||| || ||| ||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |
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| T |
14410953 |
ttatcgacgcggtgaagatggtgaaagtatgattggatgttttgtaaaatttttgtgtactctcaggatatagttattgtttttatttataaatgatgta |
14411052 |
T |
|
| Q |
101 |
acatagaagaaaatcaaacc--ggggggcagtttctcagttggaaaaaagtttcctaccttgtt |
162 |
Q |
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||||||||||||||||| || | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
14411053 |
acatagaagaaaatcaacccaggaggggcagtttctcagttggaaaaaagtttcctgccttgtt |
14411116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 47213801 - 47213870
Alignment:
| Q |
161 |
ttatactcttgtgcacctgttataagttgcattagtttcatttcatgtttaacgggtataaacgaatcaa |
230 |
Q |
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||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||| || || ||||||| |
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| T |
47213801 |
ttatactgttgtgcaccagttataagttgcattagtttcatttcatgcttagcgggaatgaaggaatcaa |
47213870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 48605581 - 48605626
Alignment:
| Q |
189 |
gcattagtttcatttcatgtttaacgggtataaacgaatcaacatt |
234 |
Q |
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| T |
48605581 |
gcattagtttcatttcatgtttagcgggtataaaggaatcaacatt |
48605626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48605503 - 48605575
Alignment:
| Q |
1 |
ttatcgacaccgtgaagatggtgaaaatatgatttaatatttcctaaaaattttgtataccgtcgggatatag |
73 |
Q |
| |
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||||| |||| ||||||||||||||||||||||| || ||| ||||||| |||||||| |||||||||||| |
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| T |
48605503 |
ttatcaacactgtgaagatggtgaaaatatgattggatgttttctaaaaaatttgtatattgtcgggatatag |
48605575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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