View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8864_low_17 (Length: 224)

Name: NF8864_low_17
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8864_low_17
NF8864_low_17
[»] chr2 (10 HSPs)
chr2 (14-205)||(6915171-6915362)
chr2 (98-154)||(10492777-10492833)
chr2 (103-155)||(28105350-28105402)
chr2 (98-161)||(10463585-10463648)
chr2 (114-161)||(10507349-10507396)
chr2 (98-149)||(10860707-10860758)
chr2 (98-160)||(10474161-10474223)
chr2 (98-154)||(7476566-7476622)
chr2 (98-149)||(10848803-10848854)
chr2 (98-155)||(7478731-7478788)
[»] chr7 (2 HSPs)
chr7 (94-165)||(15045570-15045641)
chr7 (14-67)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (99-150)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 6915171 - 6915362
Alignment:
Q  14 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 113  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915171 agaaactgtgtcagaggtagatgatgtacttgctgaagcgtttcttagtgatgatgagaacatttcagctgctgaccttgagggagcaattcgtagggct 6915270  T
Q  114 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttacttattt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6915271 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaacacgggggtacaaccacttctggatggtgtagttagttattt 6915362  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 10492833 - 10492777
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 154  Q
    ||||||||||||||| ||||||||||  |||||| ||||||| ||||||||||||||    
T  10492833 agcaattcgtagggcaaccatagcacataaatttgtaccggttttcatgggtagtgc 10492777  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 28105350 - 28105402
Alignment:
Q  103 ttcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 155  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||| ||||    
T  28105350 ttcgtagggccaccatagcacggaagtttataccagtattcatgggtaatgct 28105402  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 10463648 - 10463585
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 161  Q
    |||||||||||| || || ||||||||||||||||||||  | ||||||||||||||| |||||    
T  10463648 agcaattcgtagagccacgatagcacggaaatttataccatttttcatgggtagtgctttcaaa 10463585  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 10507396 - 10507349
Alignment:
Q  114 accatagcacggaaatttataccggtattcatgggtagtgctgtcaaa 161  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||    
T  10507396 accatagcacggaaatttatacccgtattcatgggcagtgctttcaaa 10507349  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 10860758 - 10860707
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 149  Q
    |||| |||||||||  ||||||||||||||||||||||| ||||||||||||    
T  10860758 agcagttcgtagggtcaccatagcacggaaatttataccagtattcatgggt 10860707  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 10474223 - 10474161
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaa 160  Q
    |||| |||||||||| |||||||||||||| ||||||||  |||||||||| |||||| ||||    
T  10474223 agcagttcgtagggccaccatagcacggaagtttataccaatattcatgggcagtgctttcaa 10474161  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 7476566 - 7476622
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgc 154  Q
    |||||||| |||||| || ||||||| ||||||| ||||||| ||||||||||||||    
T  7476566 agcaattcatagggcaactatagcacagaaatttgtaccggttttcatgggtagtgc 7476622  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 10848854 - 10848803
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggt 149  Q
    |||| |||||||||| ||||||||||  ||||||||||| ||||||||||||    
T  10848854 agcagttcgtagggccaccatagcacacaaatttataccagtattcatgggt 10848803  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 7478731 - 7478788
Alignment:
Q  98 agcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgct 155  Q
    |||| ||| |||||| |||| |||||| |||||||||||||| |||||||| ||||||    
T  7478731 agcagttcttagggcaaccagagcacgcaaatttataccggtcttcatgggcagtgct 7478788  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 15045641 - 15045570
Alignment:
Q  94 agggagcaattcgtagggctaccatagcacggaaatttataccggtattcatgggtagtgctgtcaaaaaca 165  Q
    ||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||| |||||||||    
T  15045641 agggagccattcgtagggctaccgtggcgcggaaatttataccggtattcatgggtagtgctttcaaaaaca 15045570  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 15047606 - 15047553
Alignment:
Q  14 agaacctgtgtcagaggtagatgatgtacttgctgaagcgtttcttagcgatga 67  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||||||| |||||    
T  15047606 agaaactgtgtcagaggttgatgatatacttgcggaagcgtttcttagtgatga 15047553  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 44307073 - 44307022
Alignment:
Q  99 gcaattcgtagggctaccatagcacggaaatttataccggtattcatgggta 150  Q
    |||||||||||||| |||||||||||||||||| ||||  | ||||||||||    
T  44307073 gcaattcgtagggcaaccatagcacggaaatttgtaccaattttcatgggta 44307022  T

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