View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_low_19 (Length: 205)
Name: NF8864_low_19
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_19 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: scaffold0710 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 4554 - 4732
Alignment:
| Q |
11 |
agtgagaagaacaatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtat |
110 |
Q |
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| T |
4554 |
agtgaaaaggacaatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtat |
4653 |
T |
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| Q |
111 |
ctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagttta |
189 |
Q |
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| T |
4654 |
ctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagttta |
4732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 51860595 - 51860773
Alignment:
| Q |
11 |
agtgagaagaacaatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtat |
110 |
Q |
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| T |
51860595 |
agtgaaaaggacaatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtat |
51860694 |
T |
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| Q |
111 |
ctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagttta |
189 |
Q |
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| T |
51860695 |
ctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagttta |
51860773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 51850158 - 51850324
Alignment:
| Q |
21 |
acaatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaac |
120 |
Q |
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| T |
51850158 |
acaatttggaatgttggcaaagatgatccaagaagggtggtccattctttgaaagttggtcttgctttgacacttgtatctttgttgtatctaatggagc |
51850257 |
T |
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| Q |
121 |
cattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtt |
187 |
Q |
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| T |
51850258 |
cattgttcaaagggataggggaaaatgctatgtgggctgtcatgactgtggttgtggtcatggagtt |
51850324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 51756057 - 51755945
Alignment:
| Q |
77 |
tggtttagctttgacacttgtttcattgttgtatctaatggaaccattgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtg |
176 |
Q |
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| T |
51756057 |
tggtttagttttgacacttgtttccttgttgtatcttatggagccattgttcaaagtgatgggaaagaatgttgtggttgctgtcatgactgtggttgtt |
51755958 |
T |
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| Q |
177 |
gtcatggagttta |
189 |
Q |
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| T |
51755957 |
gtcatggagttta |
51755945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 51820610 - 51820774
Alignment:
| Q |
23 |
aatttggaaagttggcaaagatgatccaagaaaagtggttcattcattgaaagttggtttagctttgacacttgtttcattgttgtatctaatggaacca |
122 |
Q |
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|||||||||||||||||||||||||||||||| | | ||||| ||||||||||| | ||||| |||| || || ||| |||||||||||||||| |
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| T |
51820610 |
aatttggaaagttggcaaagatgatccaagaaggatactccattctctgaaagttggtcttgctttagcactagtatctttgctgtatctaatggaacct |
51820709 |
T |
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| Q |
123 |
ttgtacaaagggataggaaaaaatgctgttgttgctgtcatgactgtggttgtggtcatggagtt |
187 |
Q |
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| T |
51820710 |
ttgttcaaagggataggatcaaatgctatgtgggctgtcatgactgtggttgtggtcatggagtt |
51820774 |
T |
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