View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8864_low_3 (Length: 437)
Name: NF8864_low_3
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 42258538 - 42258125
Alignment:
| Q |
19 |
aagctaacaatttcattgaccaaactgttactgctatgatgttattttgtcatttcaaaccatgttgtcctttaaattaatgctactataatctttaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258538 |
aagctaacaatttcattgaccaaactgtcactgctatgatgttattttgtcatttcaaaccatgttgtcctttaaattaatgctactataatctttaaca |
42258439 |
T |
|
| Q |
119 |
aaataatatatata----ctatactataaaaatcagtgctaatttccctttaactttacaataaactgttataagcaccatcagaatcaataaacagtta |
214 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258438 |
aaataatatatatatacactatactataaaaatcagtgctaatttccctttaactttacaataaactgttataagcaccatcagaatcaataaacagtta |
42258339 |
T |
|
| Q |
215 |
tttgaagcagtttaaagactttaaggtatgtgactttaggcctttagcaaacaaattagttttaataaattttgtttcaaccccacagccatatgtaaag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258338 |
tttgaagcagtttaaagactttaaggtatgtgactttaggcctttagcaaacaaattagttttaataaattttgtttcaaccccacagccatatgtaaag |
42258239 |
T |
|
| Q |
315 |
cagggacaagcattttgctaaagagaaggaaagagaaaactaaaaaggaacaagtttgttaacaaaaaattcgttgttgaagaatcactcctcaactctt |
414 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258238 |
tagggacaagca-tttgctaaagagaaggaaagagaaaactaaaaaggaacaagtttgttaacaaaaaattcgttgttgaagaatcactcctcaactctt |
42258140 |
T |
|
| Q |
415 |
aacatcttctctgct |
429 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
42258139 |
aacatcttctgtgct |
42258125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University