View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_low_5 (Length: 308)
Name: NF8864_low_5
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 29 - 194
Target Start/End: Complemental strand, 43239869 - 43239706
Alignment:
| Q |
29 |
gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttcctcnnnnnnnnnnnnnnnnngaataatg |
128 |
Q |
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| T |
43239869 |
gcaacaaaaattgcctcgcacattattcgttatggtttcgctttaaaagaattggcttgatatagcgccttcct--ttttctttctttttttgaataatg |
43239772 |
T |
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| Q |
129 |
atatatgtcccgaagttttttatcccgaccaattcaaacccgtataaaataacatgatcatcacct |
194 |
Q |
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| T |
43239771 |
atatatgttccgaagttttttatcccgaccaattcaaacccgtataaaataacatgatcatcacct |
43239706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 206 - 290
Target Start/End: Complemental strand, 43239613 - 43239529
Alignment:
| Q |
206 |
tttcgggataacatgtttcgcattaatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagacc |
290 |
Q |
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| T |
43239613 |
tttcgggataacatgttttgcattaatcttacttgattttcctatttactagctgatcaacacattaaaatagggactttagacc |
43239529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 290
Target Start/End: Complemental strand, 43229797 - 43229739
Alignment:
| Q |
232 |
tcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagacc |
290 |
Q |
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| T |
43229797 |
tcttacttgtttttcctatttactagttggtcaacccattaaaatagggactttagacc |
43229739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 43246334 - 43246273
Alignment:
| Q |
229 |
taatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagacc |
290 |
Q |
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| T |
43246334 |
taatattacttgttttacctatttactagctggtcaacccattaaaatagggactttagacc |
43246273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 43252799 - 43252738
Alignment:
| Q |
229 |
taatcttacttgattttcctatttactagctggtcaacacattaaaataggaactttagacc |
290 |
Q |
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| T |
43252799 |
taatattacttgttttacctatttactagctggtcaacccattaaaatagggactttagacc |
43252738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43246598 - 43246527
Alignment:
| Q |
29 |
gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc |
100 |
Q |
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| T |
43246598 |
gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc |
43246527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43253063 - 43252992
Alignment:
| Q |
29 |
gcaacaaaaattgcctcgcacattattcgttatggtttcgctgtaaaagaattggcttgatatagcgccttc |
100 |
Q |
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|||||||||||| |||| ||||||||||| ||||||||| ||||||||||| || |||||||||| ||||| |
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| T |
43253063 |
gcaacaaaaatttcctcacacattattcgctatggtttcattgtaaaagaatcgggttgatatagcaccttc |
43252992 |
T |
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