View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_low_6 (Length: 307)
Name: NF8864_low_6
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_6 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 39627562 - 39627256
Alignment:
| Q |
1 |
ctcgttaacttgaaaattcaaaataaccaaaatgcatgtcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39627562 |
ctcgttaacttgaaaattcaaaataaccaaaatgcatttcatttttcttatctattagtcacattgtaacagggctctcaagttatgagagcataaagct |
39627463 |
T |
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| Q |
101 |
caagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgttt |
200 |
Q |
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| T |
39627462 |
caagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgttt |
39627363 |
T |
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| Q |
201 |
ctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggtaatagatggctatcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |
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| T |
39627362 |
ctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaa |
39627263 |
T |
|
| Q |
301 |
cgcagca |
307 |
Q |
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||||||| |
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| T |
39627262 |
cgcagca |
39627256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 307
Target Start/End: Complemental strand, 39616849 - 39616534
Alignment:
| Q |
4 |
gttaacttgaaaattcaaaataaccaaaatgcatgtcatttttcttatctattagtcacattgtaacagggctctcaag------------------tta |
85 |
Q |
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| T |
39616849 |
gttaacttgaaaattcaaaataaccaaaatgcatgtcatttttcttatctattagtcacattgtaacatggctctcaaaattcacaagcaatttaactta |
39616750 |
T |
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| Q |
86 |
tgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaacttgatttgtccttc |
185 |
Q |
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| T |
39616749 |
tgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaggaacttcatttgtccttc |
39616650 |
T |
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| Q |
186 |
cagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggta |
285 |
Q |
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| T |
39616649 |
cagtactttcagtttccgtatcaatatcagtatctgtatcactatca------ctgtcttcactttcactgtcactttcttcttctaaaaggtacaggta |
39616556 |
T |
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| Q |
286 |
atagatggctatcaacgcagca |
307 |
Q |
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| T |
39616555 |
atagatgcctatcaacgcagca |
39616534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 138 - 267
Target Start/End: Original strand, 39583520 - 39583646
Alignment:
| Q |
138 |
gcagctgtttccttttctattgatcatcaagaacttgatttgtccttccagtactttccgtttctgtatcgatatcagtatctgtatcattatcagtgtc |
237 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||| ||||| |||||||||| |||||| |||| ||||| |
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| T |
39583520 |
gcagttgtttccttttctattgatcag---gaacttggtttgtccttcaagtactttcagtttcggtatcactatcagtatccgtatcactatctgtgtc |
39583616 |
T |
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| Q |
238 |
cgtgtcttcactttcactatcactttcttc |
267 |
Q |
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| T |
39583617 |
tgtgtcttcactttcactgtcactttcttc |
39583646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 24200402 - 24200314
Alignment:
| Q |
83 |
ttatgagagcataaagctcaagtttccgaatcatcccttttgtactaacaaaattgcagctgtttccttttctattgatcatcaagaac |
171 |
Q |
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||||||||||||||||||||||||||| |||| |||||||| |||||||||| |||||||||||| |||||||||||||||||| |||| |
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| T |
24200402 |
ttatgagagcataaagctcaagtttccaaatcttcccttttctactaacaaagttgcagctgttttcttttctattgatcatcaggaac |
24200314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 306
Target Start/End: Complemental strand, 47532847 - 47532772
Alignment:
| Q |
228 |
tatcagtgtccgtgtcttcactttcactatcactttcttcttctaaaaggtacaggtaatagatggctatcaacgcagc |
306 |
Q |
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||||||| || ||| ||||||||||||| ||||||| |||| ||||||||||||| ||||||| |||||| ||||| |
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| T |
47532847 |
tatcagtatctgtggcttcactttcactgtcacttt---cttccaaaaggtacaggtcatagatgcatatcaaggcagc |
47532772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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