View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8864_low_7 (Length: 294)
Name: NF8864_low_7
Description: NF8864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8864_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 39616530 - 39616255
Alignment:
| Q |
1 |
ataatcttattcatacgtgtacaatggaagattggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacactttttatttgaac |
100 |
Q |
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| T |
39616530 |
ataatcttattcatacgcgtacaatggaagattggcctttgattctgctttcgctcttcttcatcatcatcatcatttctaccacgctttttatttgaac |
39616431 |
T |
|
| Q |
101 |
taaacaagctagtcgtcatatttgaaagcctgcatttaaagtttaactacattatattattgaaaatttacatagaaaagagagtaaatatatcaacaca |
200 |
Q |
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| T |
39616430 |
taaacaagctagtcatcatatttgaaagtctgcatt-aatgttttactacattatattattgaaaatttacatagaaaagagagtaaatatatcaacaca |
39616332 |
T |
|
| Q |
201 |
tacatcattacaatcaaaataaaaatcttgaaacacatatcaagtttcctgagaattgtatccacaccaatacaaag |
277 |
Q |
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| T |
39616331 |
tacatcattacaatcaaaataaaaatctttaaacacatatcaagtttcctgagaattgtatccaaaccaatacaaag |
39616255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 39627252 - 39626977
Alignment:
| Q |
1 |
ataatcttattcatacgtgtacaatggaagattggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacactttttatttgaac |
100 |
Q |
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| T |
39627252 |
ataatcttattcatatgcgtacaaccgaacagtggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacgtttattatttgaac |
39627153 |
T |
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| Q |
101 |
taaacaagctagtcgtcatatttgaaagcctgcatttaaagtttaactacattatattattgaaaatttacatagaaaagagagtaa--atatatcaaca |
198 |
Q |
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| T |
39627152 |
taaacaagctagttgtcatacttgaaagtctgca-ttaatgtttaactacattatattattggaaatttacatagaaaagagagtaaatatatatcaaca |
39627054 |
T |
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| Q |
199 |
catacatcattacaatcaaaataaaaatcttgaaacacatatcaagtttcctgagaattgtatccacaccaatacaaag |
277 |
Q |
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|||| ||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||| |||||||| |
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| T |
39627053 |
catatatcattacaatcaaaataaaaatattcaaacac--atcaattttcctgagaattgtatccacactgatacaaag |
39626977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 39583745 - 39583808
Alignment:
| Q |
71 |
catcatttctaccacactttttatttgaactaaacaagctagtcgtcatatttgaaagcctgca |
134 |
Q |
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| T |
39583745 |
catcatttccaccacgttttttattcgaactaaacacgctatttgtcatacttgaaagcctgca |
39583808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 47532710 - 47532621
Alignment:
| Q |
64 |
tcatcatcatcatttctaccacactttttatttgaactaaacaagctagtcgtcatatttgaaagcctgcatttaaagtttaactacatta |
154 |
Q |
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| T |
47532710 |
tcatcgtcatcatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgca-ttaaagtttagctacatta |
47532621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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