View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8865_high_1 (Length: 785)

Name: NF8865_high_1
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8865_high_1
NF8865_high_1
[»] chr5 (8 HSPs)
chr5 (12-785)||(40112642-40113413)
chr5 (316-475)||(10647884-10648040)
chr5 (320-406)||(11991522-11991607)
chr5 (320-475)||(28735294-28735446)
chr5 (318-461)||(523623-523764)
chr5 (346-449)||(22874217-22874318)
chr5 (318-396)||(4982451-4982528)
chr5 (347-464)||(15594999-15595113)
[»] chr3 (8 HSPs)
chr3 (317-475)||(50170480-50170636)
chr3 (385-461)||(53092424-53092498)
chr3 (318-438)||(11380211-11380329)
chr3 (316-438)||(11364826-11364946)
chr3 (320-374)||(3382572-3382626)
chr3 (319-440)||(16277551-16277669)
chr3 (318-360)||(37662917-37662959)
chr3 (374-463)||(48953917-48954004)
[»] chr7 (12 HSPs)
chr7 (319-443)||(31765396-31765518)
chr7 (316-440)||(43131944-43132066)
chr7 (319-449)||(3399384-3399511)
chr7 (323-418)||(6248468-6248563)
chr7 (350-474)||(46923614-46923736)
chr7 (385-466)||(23845560-23845638)
chr7 (366-475)||(39927678-39927784)
chr7 (320-402)||(46603694-46603776)
chr7 (321-440)||(6271319-6271436)
chr7 (319-449)||(24393473-24393601)
chr7 (320-419)||(40720365-40720464)
chr7 (399-475)||(8240736-8240810)
[»] chr1 (11 HSPs)
chr1 (320-461)||(38081609-38081750)
chr1 (318-475)||(37209788-37209943)
chr1 (317-475)||(36567350-36567507)
chr1 (318-475)||(19234791-19234946)
chr1 (322-439)||(26758458-26758573)
chr1 (320-468)||(25901796-25901942)
chr1 (392-475)||(30533227-30533308)
chr1 (321-449)||(37633669-37633795)
chr1 (347-475)||(9424534-9424659)
chr1 (329-403)||(8243950-8244024)
chr1 (322-412)||(41028271-41028361)
[»] chr8 (6 HSPs)
chr8 (323-475)||(8059901-8060051)
chr8 (322-475)||(11599580-11599730)
chr8 (340-475)||(44328472-44328605)
chr8 (318-409)||(18181761-18181852)
chr8 (322-449)||(36604072-36604199)
chr8 (323-417)||(17694665-17694759)
[»] chr4 (9 HSPs)
chr4 (318-475)||(30617570-30617731)
chr4 (319-475)||(30666828-30666982)
chr4 (320-468)||(52355868-52356014)
chr4 (316-475)||(51164532-51164689)
chr4 (318-467)||(13435380-13435527)
chr4 (320-475)||(22318094-22318247)
chr4 (323-475)||(37861163-37861313)
chr4 (320-475)||(46963859-46964012)
chr4 (399-440)||(25064122-25064161)
[»] chr2 (10 HSPs)
chr2 (318-475)||(21620665-21620818)
chr2 (322-440)||(11563421-11563537)
chr2 (318-449)||(4860500-4860628)
chr2 (321-468)||(37624934-37625078)
chr2 (417-468)||(38606866-38606917)
chr2 (323-440)||(15080088-15080202)
chr2 (320-449)||(39187454-39187581)
chr2 (399-449)||(2764140-2764188)
chr2 (323-440)||(31597100-31597214)
chr2 (323-468)||(37028868-37029011)
[»] chr6 (8 HSPs)
chr6 (318-475)||(12622499-12622652)
chr6 (321-475)||(15528347-15528499)
chr6 (318-468)||(23652597-23652745)
chr6 (319-418)||(11753021-11753120)
chr6 (320-449)||(26653334-26653461)
chr6 (320-449)||(26759302-26759429)
chr6 (317-412)||(5605236-5605331)
chr6 (323-440)||(29383969-29384084)
[»] scaffold0024 (1 HSPs)
scaffold0024 (318-475)||(45827-45982)
[»] scaffold1173 (1 HSPs)
scaffold1173 (318-418)||(166-266)


Alignment Details
Target: chr5 (Bit Score: 715; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 12 - 785
Target Start/End: Complemental strand, 40113413 - 40112642
Alignment:
Q  12 aacctgtggaaagactatttcaaaatttagtaggaaacgtagggcatacaattatagtcacaagtggaatagattccaaatggaaacagatttaaagcat 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113413 aacctgtggaaagactacttcaaaatttagtaggaaacgtagggcatataattatagtcacaagtggaatagattccaaatggaaacagatttaaagcat 40113314  T
Q  112 gcacactatggatgggaaacaaatgtgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttg 211  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113313 gcacactatggatgggaaacaaaagtgtacaagaatgtttgtcccacacaattgagatttgcatacataccagctgttgtgcaacaaaactcaatagttg 40113214  T
Q  212 aagtagttggatccgattcctgtggacaggcaacagtaagtgcttcagctaatattgaagatataatttaccaagtttacctaatactaatggatagtaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113213 aagtagttggatccgattcctgtggacaggcaacagtaagtgcttcagctaatattgaagatataatttaccaagtttacctaatactaatggatagtaa 40113114  T
Q  312 tagtaaaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagt 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||     
T  40113113 tagtaaaagggaaatgttaacttgtgcccttggagcataagttaagaagccacgtgtagaagttttttattggaaattgtgcatttgatgtcttaaaagc 40113014  T
Q  412 ttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactttagcatgacccactaattaacggcaatctaatcaat 511  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40113013 ttc--aaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaattttagcatgacccaccaattaacggcaatctaatcaat 40112916  T
Q  512 ttgggaggactattcagacaattttcaaactagaaacaaccattgcaaaaatcaatagtcaaacttatacactaagcatacagcatgaagtcgggcaatg 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40112915 ttgggaggactattcagacaattttcaaactagaaacaaccattgcaaaaatcaatagtcaaacttatgcactaagcatacagcatgaagtcgggcaatg 40112816  T
Q  612 ttgatattcttttccacagcatcaacacctgtcacagtagctcccatccgagctaatggctgaagaacaaaagagatgtataagtaaaaataacaataca 711  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  40112815 ttgatattcttttccacagcatcaacacctgtcacagtagctcccatccgagctaatggctgaacaacaaaagagatgtataagtaaaaataacaataca 40112716  T
Q  712 aaatagcattcttttgatgttaaacacacaaaatttaacacactgcaaaaaagagacaggagaatacatattgc 785  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40112715 aaatagcattcttttgatgttaaacacacaaaatttagcacactgcaaaaaagagacaggagaatacatattgc 40112642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 316 - 475
Target Start/End: Complemental strand, 10648040 - 10647884
Alignment:
Q  316 aaaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    |||| ||||||| ||||||||  | |||| ||||||||||||||| || |||||| |||||||||||  ||||||||||||| ||||||||  |||||||    
T  10648040 aaaaaggaaatgttaacttgtatctttggggcataagttaagaagacaaatgtagtagatttttattaaaaattgtgcatttaatgtcttatcagtttca 10647941  T
Q  416 aaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||  |||| ||||||||||| || || |||||||| | ||||||||||| | ||||||    
T  10647940 aaaa--ttatattttcaatatataa-ttattttttaattatattttaagcttcttaactt 10647884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 320 - 406
Target Start/End: Complemental strand, 11991607 - 11991522
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtctta 406  Q
    |||||||| ||||||||| |||||| |||||| ||||||||||| |||||| | |||||| ||||||||||||||||  ||||||||    
T  11991607 gggaaatgttaacttgtgtccttggggcataaattaagaagccaaatgtagta-attttttttggaaattgtgcattcaatgtctta 11991522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 475
Target Start/End: Complemental strand, 28735446 - 28735294
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| |||||||||||||||| | ||||||||||||| || ||||||||  ||||| ||| || |||  ||||  |||||||||||||| |  |||    
T  28735446 gggaaatgttaacttgtgcccttgg-gtataagttaagaagacaaatgtagaaagtttttcttgaaacttgcacattcaatgtcttaaaagttgc--aaa 28735350  T
Q  420 agttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||  |||||||||| || |||||||| |  ||  ||||||||||| ||||||    
T  28735349 agttatagtttcaatatagaatttgtttttaatttcctttttaagctccttaactt 28735294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 318 - 461
Target Start/End: Original strand, 523623 - 523764
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||| ||||||||||||||   ||| ||||| |||||||| || || ||  || || ||| ||||||||||||| ||||||| |||| ||  ||    
T  523623 aagggaaatgttaacttgtgcccttaaggcacaagtttagaagccaaatataaaaatttatttttgaaaattgtgcatttaatgtcttgaaaggtt--aa 523720  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctatttt 461  Q
    ||| |||| ||||||||| |||| || | |||||| ||| ||||    
T  523721 aaatttatattttcaatacaaaagttatgttttaattctttttt 523764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 449
Target Start/End: Original strand, 22874217 - 22874318
Alignment:
Q  346 gcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgt 445  Q
    |||||||||||||||| | ||||||||| ||| | ||| ||||||||||||  || | |||||| ||||  ||||||||| |||| ||||||||| || |    
T  22874217 gcataagttaagaagctatatgtagaagttttattttgaaaattgtgcattcaattttttaaaaatttc--aaaagttatatttttaatataaaatttat 22874314  T
Q  446 tttt 449  Q
    ||||    
T  22874315 tttt 22874318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 396
Target Start/End: Original strand, 4982451 - 4982528
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatt 396  Q
    |||||||||| ||||||||||||||  |||| ||||||| |||| | |  ||||| |||||| ||||||||||||||||    
T  4982451 aagggaaatgttaacttgtgcccttaaagcacaagttaaaaagctaaagatagaatattttt-ttggaaattgtgcatt 4982528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 347 - 464
Target Start/End: Complemental strand, 15595113 - 15594999
Alignment:
Q  347 cataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgtt 446  Q
    |||||||||||||  || || || ||| ||||| ||  ||||||||||||  |||||| |||||||||||||  ||||| |||||||||||||| || ||    
T  15595113 cataagttaagaaatcaaatataaaagttttttctttaaaattgtgcattcaatgtct-aaaagtttcaaaa--gttattttttcaatataaaatttatt 15595017  T
Q  447 ttttaaatctattttaag 464  Q
    | |||| | |||||||||    
T  15595016 tcttaattatattttaag 15594999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 317 - 475
Target Start/End: Complemental strand, 50170636 - 50170480
Alignment:
Q  317 aaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaag-atttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    ||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||  ||||| ||||||||||||||||  ||||||||||| ||||     
T  50170636 aaagggaaatgttaacttgtgcccttggggcataagttaagaaaccaaatgtagaagtttttttcttggaaattgtgcattcaatgtcttaaaaatttc- 50170538  T
Q  416 aaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
     |||||||||||||||||||||||| || |||||| | ||||||||||||||| ||||||    
T  50170537 -aaaagttatcttttcaatataaaatttatttttt-attctattttaagctccttaactt 50170480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 461
Target Start/End: Original strand, 53092424 - 53092498
Alignment:
Q  385 aaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctatttt 461  Q
    |||||||| |||| |||| |||||||||||||||  || ||||||||||||||||||||||||||||| || |||||    
T  53092424 aaattgtgtatttaatgtattaaaagtttcaaaa--gtcatcttttcaatataaaacttgttttttaattccatttt 53092498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 438
Target Start/End: Complemental strand, 11380329 - 11380211
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||| | |||||| ||||||| | ||||||||||||||| || ||||||||  ||||| ||| || |||||||||  || ||||||| |||||  |    
T  11380329 aagggaaaggttaacttatgccctttgtgcataagttaagaagtcaaatgtagaaagtttttcttgaaacttgtgcattcaatatcttaaatgtttc--a 11380232  T
Q  418 aaagttatcttttcaatataa 438  Q
    ||||||||  |||||||||||    
T  11380231 aaagttatactttcaatataa 11380211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 11364946 - 11364826
Alignment:
Q  316 aaaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    |||||||||| | |||||| ||||||| | ||||||| ||||||| || | ||||||| ||||| ||| || |||||||||  || ||||||||||| |     
T  11364946 aaaagggaaaggttaacttatgccctttgtgcataaggtaagaagtcaaacgtagaaggttttttttgaaacttgtgcattcaatatcttaaaagttcc- 11364848  T
Q  416 aaaaagttatcttttcaatataa 438  Q
     |||||||||  |||||||||||    
T  11364847 -aaaagttatactttcaatataa 11364826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 3382572 - 3382626
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaaga 374  Q
    |||||||| |||||||||||||||| ||||||||||| | |||| ||||||||||    
T  3382572 gggaaatgttaacttgtgcccttggggcataagttaaaaggccaaatgtagaaga 3382626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 319 - 440
Target Start/End: Original strand, 16277551 - 16277669
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    ||||| ||| |||||| |||||||| | |||||||||| ||| || || || ||| ||||| || |||||||||||||  ||| ||||||||||||  ||    
T  16277551 agggacatgttaacttatgcccttgaa-cataagttaaaaagtcaaatataaaagtttttttttagaaattgtgcattcaatgccttaaaagtttc--aa 16277647  T
Q  419 aagttatcttttcaatataaaa 440  Q
    ||||||| |||| |||||||||    
T  16277648 aagttatatttttaatataaaa 16277669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 37662917 - 37662959
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaag 360  Q
    |||||||||| |||||||||||||||| |||||||||||||||    
T  37662917 aagggaaatgttaacttgtgcccttggggcataagttaagaag 37662959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 463
Target Start/End: Original strand, 48953917 - 48954004
Alignment:
Q  374 atttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaa 463  Q
    |||||| || |||||||| ||||  |||| |||||||||||||||  |||||||||||||||||||| || ||  |||| ||||||||||    
T  48953917 atttttttttgaaattgtacattcaatgttttaaaagtttcaaaa--gttatcttttcaatataaaatttattacttaattctattttaa 48954004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 31765518 - 31765396
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    |||||||| | |||||||||| |||| |||||||||||||| ||| ||||||||| ||||| ||||||||||| ||| ||||||||||||||||||  ||    
T  31765518 agggaaattccaacttgtgcctttggggcataagttaagaaaccaaatgtagaagttttttcttggaaattgtacatctgatgtcttaaaagtttc--aa 31765421  T
Q  419 aagttatcttttcaatataaaactt 443  Q
    |||||||||||||||||||||||||    
T  31765420 aagttatcttttcaatataaaactt 31765396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 316 - 440
Target Start/End: Complemental strand, 43132066 - 43131944
Alignment:
Q  316 aaaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    ||||||||||||||||||||||||||||| ||||||||||||||  || ||  ||||| ||||| |||||| || ||||||  || |||||||| || |     
T  43132066 aaaagggaaatgctaacttgtgcccttggggcataagttaagaaatcaaattcagaaggttttttttggaatttatgcattcaatatcttaaaaattgc- 43131968  T
Q  416 aaaaagttatcttttcaatataaaa 440  Q
     |||||||||  |||||||||||||    
T  43131967 -aaaagttatactttcaatataaaa 43131944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 449
Target Start/End: Complemental strand, 3399511 - 3399384
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    ||||||||||||||||||| | ||||| |||||||||||||   | || || ||| ||||| ||||||||| |||||||  ||| |||||| ||||||||    
T  3399511 agggaaatgctaacttgtgtctttgga-cataagttaagaaattaaatataaaagttttttgttggaaattttgcatttattgtattaaaaatttcaaaa 3399413  T
Q  419 aagttatcttttcaatataaaacttgttttt 449  Q
      |||||||||||||||||||| || |||||    
T  3399412 --gttatcttttcaatataaaatttattttt 3399384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 323 - 418
Target Start/End: Complemental strand, 6248563 - 6248468
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    |||| ||||| ||||||||| | |||| |||||||||| |  ||||| ||||||||| ||| ||||||| | ||| ||||||||||||||||||||    
T  6248563 aaatactaacctgtgccctttgggcatgagttaagaaggccaatgtaaaagattttttttgaaaattgtacttttaatgtcttaaaagtttcaaaa 6248468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 350 - 474
Target Start/End: Complemental strand, 46923736 - 46923614
Alignment:
Q  350 aagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttt 449  Q
    ||||||||||| || || |||||| ||||| ||| ||||||||||||| |||| |||||||||||  ||||||||| |||| |||| |||| || |||||    
T  46923736 aagttaagaagtcaaatatagaagttttttcttgaaaattgtgcatttaatgttttaaaagtttc--aaaagttatattttgaatacaaaatttattttt 46923639  T
Q  450 taaatctattttaagctccgtaact 474  Q
     |  |  |||||||||||| |||||    
T  46923638 aattttcattttaagctccttaact 46923614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 385 - 466
Target Start/End: Complemental strand, 23845638 - 23845560
Alignment:
Q  385 aaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagct 466  Q
    ||||||||||||| | ||||||||||||| |||||  |||| ||||||||||||||| | ||||||||  ||||||||||||    
T  23845638 aaattgtgcatttaa-gtcttaaaagttttaaaaa--ttatattttcaatataaaacatattttttaatactattttaagct 23845560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 366 - 475
Target Start/End: Original strand, 39927678 - 39927784
Alignment:
Q  366 tgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagc 465  Q
    |||||||| ||||| ||| ||||| ||||||| || |||||||| ||||||||  ||||| |||| ||||||||| || ||||| |  ||||||||||||    
T  39927678 tgtagaagtttttttttgaaaattatgcattt-atatcttaaaaatttcaaaa--gttatatttttaatataaaatttatttttaatttctattttaagc 39927774  T
Q  466 tccgtaactt 475  Q
    ||| ||||||    
T  39927775 tccttaactt 39927784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 402
Target Start/End: Original strand, 46603694 - 46603776
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgt 402  Q
    |||||||||||||||||||||||   ||| |||||||||| | | |  |||||  ||||||||||||||||||||||| ||||    
T  46603694 gggaaatgctaacttgtgcccttaaggcaaaagttaagaaactaaagatagaaactttttattggaaattgtgcatttcatgt 46603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 440
Target Start/End: Complemental strand, 6271436 - 6271319
Alignment:
Q  321 ggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaa 420  Q
    ||||||| |||||| ||||||||| ||||||||||||||  || ||||||||  ||||| ||  || |||||||||  ||  |||||||||| |  ||||    
T  6271436 ggaaatgttaacttatgcccttggggcataagttaagaaagcaaatgtagaaagtttttcttaaaacttgtgcattcaatagcttaaaagttgc--aaaa 6271339  T
Q  421 gttatcttttcaatataaaa 440  Q
    |||||  |||||||||||||    
T  6271338 gttatactttcaatataaaa 6271319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 449
Target Start/End: Original strand, 24393473 - 24393601
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    ||||||||  |||||||||| | |||  ||||| |||||||| || ||||||||| ||||| ||| || || | ||||  |||||||||||||| |||||    
T  24393473 agggaaattttaacttgtgctcgtgggacataaattaagaaggcaaatgtagaaggtttttcttgaaacttatccattcaatgtcttaaaagttgcaaaa 24393572  T
Q  419 aagttatcttttcaatataaaacttgttttt 449  Q
    |  ||||  ||||||||||||| || |||||    
T  24393573 a--ttatactttcaatataaaatttattttt 24393601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 419
Target Start/End: Original strand, 40720365 - 40720464
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| |||||||||| ||||| |||||| ||||||||| | || | |||  ||| | ||| ||||| ||||||| || |||||||||||| |||||    
T  40720365 gggaaatgttaacttgtgcgcttggggcataaattaagaagctaaatatggaacttttattttgaaaattatgcatttaatatcttaaaagttttaaaaa 40720464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 8240736 - 8240810
Alignment:
Q  399 atgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||| ||||||||||||||||  |||| |||| |||||||||||| |||||||  |  |||||||||||| ||||||    
T  8240736 atgtattaaaagtttcaaaaa--ttatattttaaatataaaacttattttttattttcattttaagctccttaactt 8240810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 9e-29; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 320 - 461
Target Start/End: Complemental strand, 38081750 - 38081609
Alignment:
Q  320 gggaaatgctaacttgtgccctt--ggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||||||||||||||||  || |||||||||||||| | | |||| |||| ||||| ||||||||||||||||  ||||||||||||||||  |    
T  38081750 gggaaatgctaacttgtgcccttcgggggcataagttaagaaactaaatgttgaagttttttcttggaaattgtgcattcaatgtcttaaaagtttc--a 38081653  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctatttt 461  Q
    ||||||||||||||||||||||| || ||  |||| ||||||||    
T  38081652 aaagttatcttttcaatataaaatttattacttaattctatttt 38081609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 318 - 475
Target Start/End: Original strand, 37209788 - 37209943
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    ||||||||||||| ||||||||||  | ||| | |||||||| ||| ||||||||| ||||| ||||||||||||||||| || |||||||||||||  |    
T  37209788 aagggaaatgctatcttgtgccctaagggcacaggttaagaaaccaaatgtagaagttttttcttggaaattgtgcatttaatatcttaaaagtttc--a 37209885  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||||||||||||||| ||  |||| |||||| || ||||| |||| | ||||||    
T  37209886 aaagttatcttttcaatattaagtttgtcttttaattccatttttagcttcttaactt 37209943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 317 - 475
Target Start/End: Complemental strand, 36567507 - 36567350
Alignment:
Q  317 aaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagattttt-attggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    ||||| ||||| ||||||||||| || | ||| |||||||||| | | ||||||||| ||||| |||  || |||||||||  ||||||| |||||||||    
T  36567507 aaaggaaaatgttaacttgtgcctttagggcagaagttaagaaactaaatgtagaagtttttttattaaaagttgtgcattcaatgtcttgaaagtttca 36567408  T
Q  416 aaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||  ||||| ||||||||||||| || ||| |||| |||||||||| |||| ||||||    
T  36567407 aaaa--ttatcatttcaatataaaatttatttgttaattctattttaaactccttaactt 36567350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 475
Target Start/End: Original strand, 19234791 - 19234946
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||| |||||||||||||||  |||||||||||||| ||| ||||||||  ||||| ||||||  ||||||||  |||||| | ||||| |  |    
T  19234791 aagggaaatgttaacttgtgcccttgcggcataagttaagaaaccaaatgtagaaattttttcttggaacctgtgcattcaatgtctcagaagttgc--a 19234888  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||||  ||||||||||||| || ||||| |  || |||||||| ||| ||||||    
T  19234889 aaagttatactttcaatataaaatttatttttaatttccattttaagttccttaactt 19234946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 322 - 439
Target Start/End: Original strand, 26758458 - 26758573
Alignment:
Q  322 gaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaag 421  Q
    ||||||||||| |||||| ||| ||||||||||||||||||| || || ||   |||| ||| ||||||||||||  |||| |||||||||||  |||||    
T  26758458 gaaatgctaacatgtgcctttgaagcataagttaagaagccaaatatataaatgtttttttgaaaattgtgcattcaatgtgttaaaagtttc--aaaag 26758555  T
Q  422 ttatcttttcaatataaa 439  Q
    |||| |||||||||||||    
T  26758556 ttatattttcaatataaa 26758573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 320 - 468
Target Start/End: Complemental strand, 25901942 - 25901796
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| ||||||||||||||||  ||||||||||||| | | || |||||| ||||| |||||| || ||||||  ||||||| |||||| |  |||    
T  25901942 gggaaatgttaacttgtgcccttgggacataagttaagaaactaaatctagaaggtttttcttggaatttatgcattcaatgtcttgaaagttgc--aaa 25901845  T
Q  420 agttatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
    ||||||| ||| ||||| ||  || |||||||  || ||||||||||||    
T  25901844 agttatccttttaatatgaactttattttttatttccattttaagctcc 25901796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 392 - 475
Target Start/End: Complemental strand, 30533308 - 30533227
Alignment:
Q  392 gcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||||| ||||||||||| ||||||||  | |||||||||||||||||| || | |||||| ||||||||||||||| ||||||    
T  30533308 gcatttaatgtcttaaaaatttcaaaa--gctatcttttcaatataaaatttatcttttaattctattttaagctccttaactt 30533227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 321 - 449
Target Start/End: Complemental strand, 37633795 - 37633669
Alignment:
Q  321 ggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaa 420  Q
    ||||||| ||||||||||| |||   ||||||||| ||||| |  |||||||| || || ||  ||||||||||||  ||||||||||||||||  ||||    
T  37633795 ggaaatgttaacttgtgcctttgagacataagttacgaagctaattgtagaagtttattcttaaaaattgtgcattcaatgtcttaaaagtttc--aaaa 37633698  T
Q  421 gttatcttttcaatataaaacttgttttt 449  Q
    ||||| ||||||| |||||| || |||||    
T  37633697 gttatattttcaacataaaatttattttt 37633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 475
Target Start/End: Original strand, 9424534 - 9424659
Alignment:
Q  347 cataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgtt 446  Q
    |||| |||||||||  | ||||||||| ||||| ||| ||||||||||||  |||| |||||||||||  ||||||||| |||| ||||||||| || ||    
T  9424534 catatgttaagaagttaaatgtagaagtttttttttgcaaattgtgcattcaatgt-ttaaaagtttc--aaaagttatatttttaatataaaatttatt 9424630  T
Q  447 ttttaaatctattttaagctccgtaactt 475  Q
    ||| |  || |||||||| ||| ||||||    
T  9424631 tttaatttccattttaagttccttaactt 9424659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 8244024 - 8243950
Alignment:
Q  329 taacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtc 403  Q
    ||||||||||||||| |||||||||||||||| || ||||| ||  ||||| |||  | |||||||||| |||||    
T  8244024 taacttgtgcccttgaagcataagttaagaagacaaatgtaaaaagtttttcttgatatttgtgcatttaatgtc 8243950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 322 - 412
Target Start/End: Original strand, 41028271 - 41028361
Alignment:
Q  322 gaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtt 412  Q
    ||||||||||||||| ||||||  ||||||| |||||||  | |||| |||| ||||| ||| ||| |||| |||  ||||||||||||||    
T  41028271 gaaatgctaacttgtacccttgaggcataagataagaagttaaatgtggaagttttttcttgaaaactgtgtattcaatgtcttaaaagtt 41028361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 475
Target Start/End: Original strand, 8059901 - 8060051
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    ||||| |||||||||||||||  |||||||||||||| ||| ||||||||| ||||  ||||||||||||||||  ||||||||||||| ||  ||||||    
T  8059901 aaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgtagaagtttttgcttggaaattgtgcattcaatgtcttaaaagtctc--aaaagt 8059998  T
Q  423 tatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||   || |||||||||||| |||||||  || |||||||||||| ||||||    
T  8059999 tataaatttaatataaaacttattttttatttccattttaagctccttaactt 8060051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 322 - 475
Target Start/End: Original strand, 11599580 - 11599730
Alignment:
Q  322 gaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaag 421  Q
    |||||||||||||||||||||||||| ||||||||||||  | ||| | ||  ||||||||| ||||||||||||| |||||||||||||||   |||||    
T  11599580 gaaatgctaacttgtgcccttggagcgtaagttaagaagtta-atgcaaaatttttttattgaaaattgtgcatttaatgtcttaaaagttt--gaaaag 11599676  T
Q  422 ttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||||| |||| |||| || | ||| || ||||||||||||| | ||||||    
T  11599677 ttatctttttaataaaaaatttatatttaaattctattttaagcttcttaactt 11599730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 340 - 475
Target Start/End: Original strand, 44328472 - 44328605
Alignment:
Q  340 cttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagttatcttttcaatataaa 439  Q
    |||| |||||||||||||||| || ||||||||| ||||| |||||| |||||||||  ||||||||||| || |  |||||||||  ||| ||||||||    
T  44328472 cttgaagcataagttaagaagacaaatgtagaaggtttttcttggaacttgtgcattcaatgtcttaaaaattgc--aaaagttatacttttaatataaa 44328569  T
Q  440 acttgttttttaaatctattttaagctccgtaactt 475  Q
    | || ||||| |  || ||||||| |||| ||||||    
T  44328570 atttatttttaatttccattttaaactccttaactt 44328605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 409
Target Start/End: Complemental strand, 18181852 - 18181761
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaa 409  Q
    |||||||||||||||||||||||||   |||||| || |  ||||| ||||||||  || || ||| ||||||||||||  |||||||||||    
T  18181852 aagggaaatgctaacttgtgcccttaaggcataaatttaatagccaaatgtagaaacttgtttttgaaaattgtgcattcaatgtcttaaaa 18181761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 36604199 - 36604072
Alignment:
Q  322 gaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattgg--aaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||| |||||||| |||||  ||||||| ||||||||  | ||||||||| ||||| ||    ||||||||||||  || |||||||||||||| |||    
T  36604199 gaaatgttaacttgtaccctttaagcataaattaagaagataaatgtagaaggttttttttttttaaattgtgcattcaatatcttaaaagtttcagaaa 36604100  T
Q  420 agttatcttttcaatataaaacttgttttt 449  Q
      |||| |||||||||||||| || |||||    
T  36604099 --ttatattttcaatataaaatttattttt 36604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 417
Target Start/End: Original strand, 17694665 - 17694759
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||||| || | |||  | ||||||||||||| ||  |||||||||||||| ||  || || ||||||| |||||||||||||| ||||    
T  17694665 aaatgctaacttatgtctttgcggtataagttaagaagacaattgtagaagatttttcttaaaacttctgcatttaatgtcttaaaagttacaaa 17694759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 318 - 475
Target Start/End: Complemental strand, 30617731 - 30617570
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggag------cataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagt 411  Q
    ||||||||||||||||||||||||||  |      ||||||||||||| ||| || |||||| ||||| ||||||||||||||||  || ||||||||||    
T  30617731 aagggaaatgctaacttgtgcccttgtggttgtggcataagttaagaaaccaaatatagaagttttttcttggaaattgtgcattcaatctcttaaaagt 30617632  T
Q  412 ttcaaaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||  |||||||||| ||||||||||||| ||  ||| ||| ||||||||||||||| ||||||    
T  30617631 ttc--aaaagttatcctttcaatataaaatttactttctaattctattttaagctccttaactt 30617570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 319 - 475
Target Start/End: Original strand, 30666828 - 30666982
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    ||||||||| |||||||||||||||  ||| |||||||||| ||| ||||||||| ||||| |||||| |||||||||  |||||||||||||| |  ||    
T  30666828 agggaaatgttaacttgtgcccttgaggcacaagttaagaaaccaaatgtagaaggttttttttggaacttgtgcattcaatgtcttaaaagttgc--aa 30666925  T
Q  419 aagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||||||  || |||||||||| || ||||| |  ||||||||||||||| ||||||    
T  30666926 aagttatacttccaatataaaatttatttttaatttctattttaagctccttaactt 30666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 320 - 468
Target Start/End: Complemental strand, 52356014 - 52355868
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| |||||||||||||||  |||||||||||||| ||| || ||| ||  |||||||||||||||||||||  ||||||||||||||||  |||    
T  52356014 gggaaatgttaacttgtgcccttgaggcataagttaagaaaccaaatttagtagtattttattggaaattgtgcattcaatgtcttaaaagtttc--aaa 52355917  T
Q  420 agttatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
    |||||| |||||| ||||||| || ||||| |  || ||||||||||||    
T  52355916 agttatattttcattataaaatttatttttaatttccattttaagctcc 52355868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 316 - 475
Target Start/End: Complemental strand, 51164689 - 51164532
Alignment:
Q  316 aaaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    ||||| |||||| |||||||||||||||  ||| |||||||||| | | |||| |||  ||||| ||| ||| ||||||||  ||||||||||||||||     
T  51164689 aaaagagaaatgttaacttgtgcccttgaggcagaagttaagaaactaaatgtggaaattttttcttgaaaagtgtgcattcaatgtcttaaaagtttc- 51164591  T
Q  416 aaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
     ||||||||| |||||||||||||| || ||  |||| ||||||||||| ||| ||||||    
T  51164590 -aaaagttattttttcaatataaaatttattacttaattctattttaagttccttaactt 51164532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 467
Target Start/End: Complemental strand, 13435527 - 13435380
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||| ||||| ||||| ||||||||||  ||||||||||||| ||| || || ||| ||||| |||||||||||  |||| || ||||||||||||   |    
T  13435527 aaggaaaatgataactcgtgcccttgggacataagttaagaaaccaaatataaaagttttttcttggaaattgtatatttaatttcttaaaagttt--ta 13435430  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctc 467  Q
    ||| |||| ||||||||| ||||||| |||||||  || |||||||||||    
T  13435429 aaacttatgttttcaatacaaaacttattttttatttccattttaagctc 13435380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 320 - 475
Target Start/End: Original strand, 22318094 - 22318247
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| ||| |||||| ||||| |||||||||||| | ||| ||||||||  ||||| ||  || |||||||||| |||  || ||||||||  |||    
T  22318094 gggaaatgttaatttgtgctcttggggcataagttaaggaaccaaatgtagaaacttttttttaaaagttgtgcatttaatgctttgaaagtttc--aaa 22318191  T
Q  420 agttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||| ||| ||||||||| || ||| |||| ||||||||||| ||| ||||||    
T  22318192 agttatcatttaaatataaaatttatttgttaattctattttaagttccttaactt 22318247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 323 - 475
Target Start/End: Original strand, 37861163 - 37861313
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    ||||| ||||||||||||||   ||| ||||| |||| ||| ||||||||  ||  | ||||||||||||||||  ||||||| |||||||  |||||||    
T  37861163 aaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattcaatgtcttgaaagttt--aaaaagt 37861260  T
Q  423 tatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||| ||||||||| ||||||| | |||||| ||| |||| || ||| ||||||    
T  37861261 tattttttcaatacaaaacttatgttttaattctttttttagatccttaactt 37861313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 320 - 475
Target Start/End: Complemental strand, 46964012 - 46963859
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| ||||||||||||||   ||| ||||| |||| ||| ||||||||  ||  | |||||||| |||||||  ||||||| |||||||  ||||    
T  46964012 gggaaatgttaacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaatcgtgcattcaatgtcttgaaagttt--aaaa 46963915  T
Q  420 agttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||||| ||||||||| ||||||| | |||||| ||| |||| || ||| ||||||    
T  46963914 agttattttttcaatacaaaacttatgttttaattctttttttagatccttaactt 46963859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 25064161 - 25064122
Alignment:
Q  399 atgtcttaaaagtttcaaaaaagttatcttttcaatataaaa 440  Q
    ||||||||||||||||||||  ||||||||||||||||||||    
T  25064161 atgtcttaaaagtttcaaaa--gttatcttttcaatataaaa 25064122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 9e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 318 - 475
Target Start/End: Complemental strand, 21620818 - 21620665
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||| ||||||||||| |||  |||||||||||||| ||| |||||||||| |||  ||||||||||||||||| ||||||| ||||| |||||    
T  21620818 aagggaaatgttaacttgtgcctttgaggcataagttaagaaaccaaatgtagaagaatttacttggaaattgtgcatttaatgtcttgaaagtctcaaa 21620719  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
        |||| |||||| |||||||||| |||||||  || |||||||| ||| ||||||    
T  21620718 ----ttatattttcattataaaacttattttttatttccattttaagttccttaactt 21620665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 322 - 440
Target Start/End: Original strand, 11563421 - 11563537
Alignment:
Q  322 gaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaag 421  Q
    |||||||||||||||||||||||  ||||||||||||||| | |||||||| |  ||| ||| ||||||||||||  ||||||||||||||||  ||| |    
T  11563421 gaaatgctaacttgtgcccttgggacataagttaagaagctaaatgtagaaaaaatttcttgaaaattgtgcattcaatgtcttaaaagtttc--aaagg 11563518  T
Q  422 ttatcttttcaatataaaa 440  Q
    |||| ||||||||||||||    
T  11563519 ttatattttcaatataaaa 11563537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 318 - 449
Target Start/End: Complemental strand, 4860628 - 4860500
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||| |||||||||||||| | ||||||||||||||| || ||||||||  ||||| |||||| |||||||||  |||||||||||||| ||||    
T  4860628 aagggaaatgttaacttgtgcccttag-gcataagttaagaagacaaatgtagaaagtttttcttggaacttgtgcattcaatgtcttaaaagttgcaaa 4860530  T
Q  418 aaagttatcttttcaatataaaacttgttttt 449  Q
    ||  ||||  ||||||||||||| || |||||    
T  4860529 aa--ttatactttcaatataaaatttattttt 4860500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 321 - 468
Target Start/End: Original strand, 37624934 - 37625078
Alignment:
Q  321 ggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaa 420  Q
    ||||||| ||||||||| |||| | |||||||||||||||||| ||||| || |   |||||| ||||||||||||  || |||||||||||| ||||      
T  37624934 ggaaatggtaacttgtgtccttag-gcataagttaagaagccaaatgtaaaaaagaattattgaaaattgtgcattcaatatcttaaaagttttaaaa-- 37625030  T
Q  421 gttatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
    ||||| |||||||||||||| || ||||| |  || ||||||||||||    
T  37625031 gttatattttcaatataaaatttatttttaatttccattttaagctcc 37625078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 417 - 468
Target Start/End: Complemental strand, 38606917 - 38606866
Alignment:
Q  417 aaaagttatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
    ||||||||||||||||||||||||||| |||||||| |  ||||||||||||    
T  38606917 aaaagttatcttttcaatataaaacttattttttaatttcattttaagctcc 38606866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 15080088 - 15080202
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    ||||| |||||||||||||||| ||||||||||| || ||| || || ||| ||||||||  || || || |||| |||||||||||||| |  ||||||    
T  15080088 aaatgttaacttgtgcccttgg-gcataagttaaaaaaccaaatttaaaaggtttttattaaaatttatgtatttaatgtcttaaaagttgc--aaaagt 15080184  T
Q  423 tatcttttcaatataaaa 440  Q
    |||  |||||||||||||    
T  15080185 tatactttcaatataaaa 15080202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 449
Target Start/End: Original strand, 39187454 - 39187581
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| ||||||| ||  ||||  |||||||||||||| || ||||||||   |||| ||| || |||||||||  || ||||||||||| |  |||    
T  39187454 gggaaatgttaacttgcgcttttgggacataagttaagaaggcaaatgtagaatggttttcttgaaacttgtgcattcaatatcttaaaagttgc--aaa 39187551  T
Q  420 agttatcttttcaatataaaacttgttttt 449  Q
    |||||| |||||||||||||| || |||||    
T  39187552 agttatattttcaatataaaatttattttt 39187581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 449
Target Start/End: Original strand, 2764140 - 2764188
Alignment:
Q  399 atgtcttaaaagtttcaaaaaagttatcttttcaatataaaacttgttttt 449  Q
    ||||||||||||||||||||  |||||||||||||||| |||||| |||||    
T  2764140 atgtcttaaaagtttcaaaa--gttatcttttcaatatcaaacttattttt 2764188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 440
Target Start/End: Original strand, 31597100 - 31597214
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    |||||||||||||||||||||  | ||| ||||||||  || || || || ||||||  | |||||||| ||||| || ||||||||| |||  ||||||    
T  31597100 aaatgctaacttgtgcccttgaggtatatgttaagaaatcaaatatataa-attttttcttgaaattgtacatttaatatcttaaaagcttc--aaaagt 31597196  T
Q  423 tatcttttcaatataaaa 440  Q
    |||||||| |||||||||    
T  31597197 tatctttttaatataaaa 31597214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 468
Target Start/End: Original strand, 37028868 - 37029011
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    ||||| ||||||||||||||    ||||||||||| |  || ||||||||| ||||  |||||||||||| |||  ||||||||||| | ||  |||||     
T  37028868 aaatgttaacttgtgcccttaagacataagttaagtaatcaaatgtagaagtttttatttggaaattgtgtattcaatgtcttaaaaatctc--aaaaga 37028965  T
Q  423 tatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
    |||  ||| |||||||||||| |||||||  || ||||||| ||||    
T  37028966 tataattttaatataaaacttattttttatttccattttaaactcc 37029011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 318 - 475
Target Start/End: Original strand, 12622499 - 12622652
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||||| |||||||||||||||  |||||||||||| | | | | ||||||| ||||| ||| ||||||||||||  ||||||| ||||||||  |    
T  12622499 aagggaaatgttaacttgtgcccttgaggcataagttaaggaactaaaagtagaagtttttttttgtaaattgtgcattcaatgtcttgaaagtttc--a 12622596  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    |||||||  ||||||| |||||| || ||  |||| ||||||||||| ||| ||||||    
T  12622597 aaagtta--ttttcaacataaaatttattacttaattctattttaagttccttaactt 12622652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 321 - 475
Target Start/End: Complemental strand, 15528499 - 15528347
Alignment:
Q  321 ggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaa 420  Q
    ||||||| |||||||||  ||||| ||||||||||| || | | ||||||||||||||| |||||| ||||| |||| ||||||||||||||    ||||    
T  15528499 ggaaatgttaacttgtgttcttggggcataagttaaaaaactaaatgtagaagatttttcttggaatttgtgaatttaatgtcttaaaagtt--gtaaaa 15528402  T
Q  421 gttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||| ||||||| | |||| || ||||| |  |||||||||| |||| ||||||    
T  15528401 gttatattttcaacacaaaatttatttttaatttctattttaatctccttaactt 15528347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 318 - 468
Target Start/End: Original strand, 23652597 - 23652745
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaag--atttttattggaaattgtgcatttgatgtcttaaaagtttca 415  Q
    |||||||||||||||||   ||||||  |||||||||||||||||| |||||||||   ||||||||  ||||||||||||  || |||||||||||||     
T  23652597 aagggaaatgctaacttt--cccttgaggcataagttaagaagccaaatgtagaagttttttttattttaaattgtgcattcaatatcttaaaagtttc- 23652693  T
Q  416 aaaaagttatcttttcaatataaaacttgttttttaaatctattttaagctcc 468  Q
     ||||||||| |||||| ||||||| |  |||| ||| |||||| ||||||||    
T  23652694 -aaaagttattttttcagtataaaattaattttgtaattctattctaagctcc 23652745  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 11753120 - 11753021
Alignment:
Q  319 agggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaa 418  Q
    ||||||||| ||||||||||||||||  ||||||||||||| ||| || || ||  |||||||||||| |||||||||  |||||||||| ||| |||||    
T  11753120 agggaaatgttaacttgtgcccttgggacataagttaagaaaccaaatataaaaagtttttattggaatttgtgcattcaatgtcttaaatgttgcaaaa 11753021  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 26653461 - 26653334
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| |||||||||| | ||  |||||| ||||||||| | ||||| ||  ||||| ||| ||||||| ||||  ||||||||||||||||  |||    
T  26653461 gggaaatgttaacttgtgctcctgtggcataaattaagaagctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttc--aaa 26653364  T
Q  420 agttatcttttcaatataaaacttgttttt 449  Q
    |||||| |||||||||| ||| || |||||    
T  26653363 agttatattttcaatatgaaatttattttt 26653334  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 26759429 - 26759302
Alignment:
Q  320 gggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaa 419  Q
    |||||||| |||||||||| | ||  |||||| ||||||||| | ||||| ||  ||||| ||| ||||||| ||||  ||||||||||||||||  |||    
T  26759429 gggaaatgttaacttgtgctcctgtggcataaattaagaagctaaatgtaaaacttttttcttgaaaattgtacattcaatgtcttaaaagtttc--aaa 26759332  T
Q  420 agttatcttttcaatataaaacttgttttt 449  Q
    |||||| |||||||||| ||| || |||||    
T  26759331 agttatattttcaatatgaaatttattttt 26759302  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 317 - 412
Target Start/End: Original strand, 5605236 - 5605331
Alignment:
Q  317 aaagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtt 412  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||  || ||||||||| ||||| ||  || |||||||||  || |||||||||||    
T  5605236 aaagggaaatgataatttgtgcctttggggcataagttaagaaatcaaatgtagaaggtttttcttttaacttgtgcattcaatatcttaaaagtt 5605331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 440
Target Start/End: Complemental strand, 29384084 - 29383969
Alignment:
Q  323 aaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaaaaagt 422  Q
    ||||| ||| ||||| | |||| | ||||||||||||| || ||||||||| ||||| ||||||  | ||||||  ||||||||||||||    ||||||    
T  29384084 aaatgttaatttgtgtcattggggtataagttaagaagacaaatgtagaaggtttttcttggaacctatgcattcaatgtcttaaaagtt--ggaaaagt 29383987  T
Q  423 tatcttttcaatataaaa 440  Q
    |||  |||||||||||||    
T  29383986 tatactttcaatataaaa 29383969  T

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Target: scaffold0024 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 318 - 475
Target Start/End: Complemental strand, 45982 - 45827
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||| ||||| |||| ||||||||||| |||||||||||| | ||| | ||||||| ||||| ||||||||||  ||||  ||||||| ||| ||||  |    
T  45982 aaggaaaatgttaacctgtgcccttggggcataagttaaggaaccaaaagtagaagttttttcttggaaattgaacattcaatgtcttgaaattttc--a 45885  T
Q  418 aaagttatcttttcaatataaaacttgttttttaaatctattttaagctccgtaactt 475  Q
    ||||||||||||| || |||||| || ||  |||| ||||||||||| ||| ||||||    
T  45884 aaagttatcttttgaacataaaatttattacttaattctattttaagttccttaactt 45827  T

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Target: scaffold1173 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 266 - 166
Alignment:
Q  318 aagggaaatgctaacttgtgcccttggagcataagttaagaagccacatgtagaagatttttattggaaattgtgcatttgatgtcttaaaagtttcaaa 417  Q
    |||||||| | |||||| ||||||| | ||||||||||||||| || ||||||||  ||||| ||| || |||||||||  || ||||||||||||||||    
T  266 aagggaaaggttaacttatgccctttgtgcataagttaagaagtcaaatgtagaaagtttttcttgaaacttgtgcattcaatatcttaaaagtttcaaa 167  T
Q  418 a 418  Q
    |    
T  166 a 166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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