View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_high_10 (Length: 303)
Name: NF8865_high_10
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 11069232 - 11068960
Alignment:
| Q |
18 |
aaattattatataaagtcttagactttatatatcttagtttgatctttgtgcaatgacaaaatgtggtgtaatatatgtggttattatgtaatttataat |
117 |
Q |
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| T |
11069232 |
aaattattatattaagtcttagactttatatatcttagtttgatttttgtgcaatgacaaaatgcggtgtaatatatgtggttattatgtaatttata-t |
11069134 |
T |
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| Q |
118 |
aatgacagctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgcagaaatatttattctttattattttaggtttggtattgttg |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
11069133 |
aatgacacctctgtaattgatcgtattcaataagattgaagttagtaattcgtgcttgcagaaatatttattctttattattctaggtttgatattgttg |
11069034 |
T |
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| Q |
218 |
tgtgtttaggttagcttcattcaacatattgattcattttagacgagatcttaaatcttaaaaaacaattctct |
291 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11069033 |
tgtgtttaagttagcttcattcaacatattgattcattttagacgagatcttaaatcttaaaaaacaattctct |
11068960 |
T |
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