View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_high_11 (Length: 250)
Name: NF8865_high_11
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 41980951 - 41980734
Alignment:
| Q |
14 |
agagaacagccattagaacaactggtataatccaatccattcaatccaaaataaatatatttaacccattagaacaaggcataagatggcaataatatca |
113 |
Q |
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| T |
41980951 |
agagaacaaccattagaacaactggtataatccaatccattcaatccaaaataaatatatttaacccattagaacaaggcataagatggcaataatatca |
41980852 |
T |
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| Q |
114 |
tgatatgtaggacaatatcccaaaattctacagaatccaattgctcccaattcccattcataataacttactaaaaagtcgctnnnnnnncttataagaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41980851 |
tgatatgtaggacaatatcccaaaattctacagaatccaattgctcccaattcccattcataataacttactaaaaagtcgctaaaaaaacttataagaa |
41980752 |
T |
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| Q |
214 |
gaaatgaaaccggaggaa |
231 |
Q |
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|||||||||||||||||| |
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| T |
41980751 |
gaaatgaaaccggaggaa |
41980734 |
T |
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