View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8865_high_5 (Length: 427)

Name: NF8865_high_5
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8865_high_5
NF8865_high_5
[»] chr8 (2 HSPs)
chr8 (1-413)||(39939970-39940382)
chr8 (225-268)||(41623117-41623160)
[»] chr3 (3 HSPs)
chr3 (77-413)||(44766709-44767045)
chr3 (77-413)||(44756616-44756952)
chr3 (218-267)||(20501355-20501404)
[»] chr1 (11 HSPs)
chr1 (11-387)||(43464990-43465366)
chr1 (227-414)||(23255882-23256070)
chr1 (227-366)||(23287377-23287516)
chr1 (110-414)||(23286925-23287234)
chr1 (113-174)||(23287577-23287638)
chr1 (214-395)||(24420814-24420995)
chr1 (111-363)||(23256389-23256641)
chr1 (217-270)||(21389967-21390020)
chr1 (114-174)||(23255780-23255840)
chr1 (311-395)||(18400117-18400201)
chr1 (230-268)||(8403470-8403508)
[»] chr7 (2 HSPs)
chr7 (214-270)||(36384272-36384328)
chr7 (214-270)||(25224743-25224799)
[»] chr4 (2 HSPs)
chr4 (352-395)||(44509826-44509869)
chr4 (214-270)||(25214586-25214642)


Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 39939970 - 39940382
Alignment:
Q  1 aatgggtcgaaaactcggtcaaggtcaattcggaacaacctatctatgcacacacaaatcaaccaacaaaaaatttgcttgcaaatcaatcccaaagaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39939970 aatgggtcgaaaactcggtcaaggtcaattcggaacaacctatctatgcacacacaaatcaaccaacaaaaaatttgcttgcaaatcaatcccaaagaga 39940069  T
Q  101 aagcttttctgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaattgaaggaacgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39940070 aagcttttctgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaatagaaggaacgt 39940169  T
Q  201 atgaggattctactgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39940170 atgaggattctactgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagc 39940269  T
Q  301 tgctggtttgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggagaattttctatttgatact 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  39940270 tgctggtttgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaaaccggagaattttctctttgatact 39940369  T
Q  401 gttgatgatgatg 413  Q
    |||||||| ||||    
T  39940370 gttgatgaagatg 39940382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Complemental strand, 41623160 - 41623117
Alignment:
Q  225 ttgttatggagctttgtgaaggtggtgaactttttgataggatt 268  Q
    ||||||||||||||||||  |||||||||||||||||| |||||    
T  41623160 ttgttatggagctttgtgctggtggtgaactttttgatcggatt 41623117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 77 - 413
Target Start/End: Original strand, 44766709 - 44767045
Alignment:
Q  77 gcttgcaaatcaatcccaaagagaaagcttttctgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctc 176  Q
    ||||||||||||||| ||||||  |||||||| || ||||| |||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||      
T  44766709 gcttgcaaatcaatctcaaagaagaagcttttgtgtaaagaggattatgatgatgcttggagagagattcaaataatgcaccatttatccgaacatccaa 44766808  T
Q  177 acgttgttagaattgaaggaacgtatgaggattctactgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaa 276  Q
    | ||||| || ||    | ||| |||||||||||   |  ||||||| | ||||||||||||||||||||||| ||| | ||||||||||||||| | ||    
T  44766809 atgttgtgaggatccgtgaaacatatgaggattcattttttgttcatttggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaa 44766908  T
Q  277 gggtcattatagtgaaagacaagctgctggtttgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaag 376  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| || |||||     
T  44766909 gggtcattatagtgagagacaagctgctaagttgattaagactattgttgaggttgttgaagcttgtcattctcttggagttatgcatagagaccttaaa 44767008  T
Q  377 ccggagaattttctatttgatactgttgatgatgatg 413  Q
    || |||||||||||||||||| |||||||||| ||||    
T  44767009 cctgagaattttctatttgattctgttgatgaagatg 44767045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 77 - 413
Target Start/End: Original strand, 44756616 - 44756952
Alignment:
Q  77 gcttgcaaatcaatcccaaagagaaagcttttctgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctc 176  Q
    ||||||||||||||| ||||||  |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||| ||||      
T  44756616 gcttgcaaatcaatctcaaagaagaagcttttatgcaaagaggattatgatgatgtttggagagagattcagataatgcaccatttgtctgaaaatccaa 44756715  T
Q  177 acgttgttagaattgaaggaacgtatgaggattctactgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaa 276  Q
    | ||||| || ||  | ||||| || ||||||||   | |||||||| | ||||||||||||||||||||||| ||| | ||||||||||||||| | ||    
T  44756716 atgttgtgaggatccatggaacttacgaggattcgttttctgttcatttggttatggagctttgtgaaggtggggaattgtttgataggattgtgcagaa 44756815  T
Q  277 gggtcattatagtgaaagacaagctgctggtttgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaag 376  Q
     || ||||||||||| ||||||||||||   |||||||  ||||||||||| ||||||||| ||||||| |||||||| |||||||| || || |||||     
T  44756816 agggcattatagtgagagacaagctgctaagttgattagaactattgttgaggttgttgaagcttgtcattctcttggagttatgcacagagaccttaaa 44756915  T
Q  377 ccggagaattttctatttgatactgttgatgatgatg 413  Q
    || ||||||||| | |||||| |||||||||| ||||    
T  44756916 cctgagaattttttgtttgattctgttgatgaagatg 44756952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 20501355 - 20501404
Alignment:
Q  218 gttcatattgttatggagctttgtgaaggtggtgaactttttgataggat 267  Q
    |||||| |||||||||| |||||||  |||||||||||||||||||||||    
T  20501355 gttcatgttgttatggaactttgtgctggtggtgaactttttgataggat 20501404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 43465366 - 43464990
Alignment:
Q  11 aaactcggtcaaggtcaattcggaacaacctatctatgcacacacaaatcaaccaacaaaaaatttgcttgcaaatcaatcccaaagagaaagcttttct 110  Q
    ||||| || ||||| ||||| || ||||| |||||||||||||||||||| ||    |||   | ||| |||||||||||||| ||||| |||||||| |    
T  43465366 aaacttggacaaggacaatttgggacaacatatctatgcacacacaaatccacagggaaactctatgcatgcaaatcaatccctaagaggaagcttttgt 43465267  T
Q  111 gcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaattgaaggaacgtatgaggattc 210  Q
    | || || |||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||  | || |||  |||| ||||||| |||||||||||    
T  43465266 gtaaggaggattatgatgatgtgtggagagagattcagatcatgcaccatttatctgaacatccaaatgtggttcaaattcaaggaacctatgaggattc 43465167  T
Q  211 tactgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtttg 310  Q
    |     ||| ||| | || |||||| | ||||  |||||||| |||||||||| |||  |  ||||||||||||||||||| | | | |||||    |||    
T  43465166 tgtgtttgtgcatttggtgatggagttgtgtgctggtggtgagctttttgataagatcattcaaaagggtcattatagtgagaaagaggctgcaaagttg 43465067  T
Q  311 attaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggagaattt 387  Q
    || ||||| |||||||  ||||||||  | ||||| ||||||||||| ||||| || ||||||||||| || |||||    
T  43465066 atgaagacaattgttggtgttgttgagacatgtcattctcttggtgtcatgcacagagatcttaagcctgaaaattt 43464990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 414
Target Start/End: Original strand, 23255882 - 23256070
Alignment:
Q  227 gttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtttgattaagactattgttg 326  Q
    ||||||||| ||||||||||||  ||| | |||||| ||||| || | ||||||||||||||||| || |||| ||||   ||||||| |||||||||||    
T  23255882 gttatggagatttgtgaaggtgaggaattgtttgatgggattatgcagaagggtcattatagtgataggcaagttgctacgttgattaggactattgttg 23255981  T
Q  327 aagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggag-aattttctatttgatactgttgatgatgatgt 414  Q
    | ||||||||| ||||||| |||||||||||||||||||| |  ||||| || ||| |||||| | ||| || |||||||||| |||||    
T  23255982 aggttgttgaagcttgtcattctcttggtgttatgcatagaggccttaaaccagagaaattttttgtttaattctgttgatgaagatgt 23256070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 227 - 366
Target Start/End: Complemental strand, 23287516 - 23287377
Alignment:
Q  227 gttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtttgattaagactattgttg 326  Q
    ||||||||||||||||||||| | ||| | ||||||||||||||| | ||||||||||||||||| |||||| | | |   ||||||  |||||||||||    
T  23287516 gttatggagctttgtgaaggttgggaattgtttgataggattgtgcagaagggtcattatagtgagagacaaaccgttaagttgattgggactattgttg 23287417  T
Q  327 aagttgttgaatcttgtcactctcttggtgttatgcatag 366  Q
    | | ||||||  ||||||| ||||||||||||||||||||    
T  23287416 aggatgttgatgcttgtcattctcttggtgttatgcatag 23287377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 110 - 414
Target Start/End: Original strand, 23286925 - 23287234
Alignment:
Q  110 tgcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaattgaaggaacgtatgaggatt 209  Q
    |||||||| |||||||| |||||||||| ||||||| |||||||||| |||||||||||||||||  | ||||| || ||  |   ||| ||||||  ||    
T  23286925 tgcaaagaggattatgatgatgtttggacagagatttagataatgcaccatttatctgaacatccaaatgttgtgaggatctagcaaacttatgagattt 23287024  T
Q  210 ct--actgctgttcatattgttatggagctttgtgaaggtggtgaac---tttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgct 304  Q
     |  | |  | ||||| | |||||| |||||| ||||||||| |||    ||||||| ||||||||| | ||||||||||||||||| ||||||||| ||    
T  23287025 ttttattttttttcatttggttatgaagctttttgaaggtggggaataattttttgaaaggattgtgtagaagggtcattatagtgatagacaagctcct 23287124  T
Q  305 ggtttgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggagaattttctatttgatactgttg 404  Q
       |||| || ||||||||||||  || ||||| ||||||  | |||||||||||||||||  || ||||| || ||||||||| | |||||   |||||    
T  23287125 acgttgactaggactattgttgagtttcttgaagcttgtccttatcttggtgttatgcataaagaccttaaacctgagaattttttgtttgaatatgttg 23287224  T
Q  405 atgatgatgt 414  Q
    |||| |||||    
T  23287225 atgaagatgt 23287234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 23287638 - 23287577
Alignment:
Q  113 aaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcc 174  Q
    ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  23287638 aaagaggattatgatgatgtttggagagagattcaaataatgcaccatttatctgaacatcc 23287577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 214 - 395
Target Start/End: Complemental strand, 24420995 - 24420814
Alignment:
Q  214 tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtttgatt 313  Q
    |||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||| |||  || |||||||  |||||| | || ||     |        
T  24420995 tgctgttcatgttgttatggagttgtgtgcaggtggtgaactttttgataggattgtggaaagagggcattatacagaaagaaaggcggcgaaacttgca 24420896  T
Q  314 aagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggagaattttctatttg 395  Q
    | |||||||||||  ||| || | || ||||| ||||||||||| |||||| | ||||||||||||||||||||||| ||||    
T  24420895 aggactattgttggtgttattcagtcatgtcattctcttggtgtaatgcatcgcgatcttaagccggagaattttctttttg 24420814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 111 - 363
Target Start/End: Complemental strand, 23256641 - 23256389
Alignment:
Q  111 gcaaagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcctcacgttgttagaattgaaggaacgtatgaggattc 210  Q
    ||||||| |||||||| ||||||| |||||||||||| | |||||| |||||||||||||||||  | ||||  || ||  | | ||| |||||||||||    
T  23256641 gcaaagaggattatgatgatgtttagagagagattcaaaaaatgcaccatttatctgaacatccaaatgttg--aggatccatgaaacttatgaggattc 23256544  T
Q  211 tac--tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgtgaaaaagggtcattatagtgaaagacaagctgctggtt 308  Q
    | |  |  | ||||| | ||||  ||||||||||| ||||| ||| | ||||||||||||||  | ||||||||| ||||| | ||||| | ||||   |    
T  23256543 ttcttttttcttcatttggttaaagagctttgtgatggtggggaattgtttgataggattgtccagaagggtcatcatagtaagagacatgttgctaaat 23256444  T
Q  309 tgattaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgca 363  Q
    |||||| ||||| |||||| |||||||   ||||||| ||||||  |||||||||    
T  23256443 tgattaggactagtgttgaggttgttgttgcttgtcattctcttaatgttatgca 23256389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 21390020 - 21389967
Alignment:
Q  217 tgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgt 270  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  21390020 tgttcatcttgttatggagctttgtgaaggtggtgagctttttgatcggattgt 21389967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 23255780 - 23255840
Alignment:
Q  114 aagaagattatgaagatgtttggagagagattcagataatgcatcatttatctgaacatcc 174  Q
    |||| |||||||| ||||| |||||||||||| |||||||||| |||||||||||||||||    
T  23255780 aagaggattatgatgatgtctggagagagatttagataatgcaccatttatctgaacatcc 23255840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 18400117 - 18400201
Alignment:
Q  311 attaagactattgttgaagttgttgaatcttgtcactctcttggtgttatgcatagggatcttaagccggagaattttctatttg 395  Q
    |||| |||||| ||||  ||||||||| | ||||| ||||||||||| |||||||| || |||||||| ||||||||||| ||||    
T  18400117 attaggactatagttggtgttgttgaagcctgtcattctcttggtgtgatgcatagagaccttaagcccgagaattttctctttg 18400201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 8403470 - 8403508
Alignment:
Q  230 atggagctttgtgaaggtggtgaactttttgataggatt 268  Q
    |||||| ||||| ||||||||||||||||||||||||||    
T  8403470 atggaggtttgtaaaggtggtgaactttttgataggatt 8403508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 36384328 - 36384272
Alignment:
Q  214 tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgt 270  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||    
T  36384328 tgctgttcatcttgttatggagctttgtgaaggtggtgagctttttgatcggattgt 36384272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 25224799 - 25224743
Alignment:
Q  214 tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgt 270  Q
    |||||||||| |||| |||||||||||||||||||| || ||||||||| |||||||    
T  25224799 tgctgttcatcttgtcatggagctttgtgaaggtggggagctttttgatcggattgt 25224743  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 395
Target Start/End: Original strand, 44509826 - 44509869
Alignment:
Q  352 tggtgttatgcatagggatcttaagccggagaattttctatttg 395  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  44509826 tggtgttatgcatcgggatcttaagccggagaattttctatttg 44509869  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 25214586 - 25214642
Alignment:
Q  214 tgctgttcatattgttatggagctttgtgaaggtggtgaactttttgataggattgt 270  Q
    ||||||| || ||||||||||  | ||||||||||||||||||||||||||||||||    
T  25214586 tgctgtttatcttgttatggaattgtgtgaaggtggtgaactttttgataggattgt 25214642  T

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