View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_high_8 (Length: 336)
Name: NF8865_high_8
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_high_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 336
Target Start/End: Original strand, 35339595 - 35339918
Alignment:
| Q |
9 |
tttggtgttgaattattaaatggatttggaacaaattgttttcgtttacttcaaatgaagaaaaaacattttcttaatttttgtaataacatagagtggg |
108 |
Q |
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| T |
35339595 |
tttggtgttgaattattaaatggatttggaacaaattgttttcgtttacttcaaatgaagaaaaaacattttcttaatttttgtaataacatagagtggg |
35339694 |
T |
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| Q |
109 |
tgactatttaagttattggagtcgtgttgtgtttacttatccatannnnnnngtttaatttctttttatatgggttgggcattatagggttgcattagtc |
208 |
Q |
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| T |
35339695 |
tgactatttaagttattggagtcgtgttgtgtttacttatccatatttttttgtttaatttctttttatatgggttgggcattatagggttgcattagtg |
35339794 |
T |
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| Q |
209 |
caattgatgattcgcatacaagtgtgtgagtttctacagagaaacaaatttctttcatgtgagggtagaaagacaacgattgcatagaatatctcgaaac |
308 |
Q |
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| T |
35339795 |
caattgatgattcgcatacaagtgtgtgagtttctacagagaaacaaa----tttcatgtgagggtagaaagacaacgattgcatagaatatctcgaaac |
35339890 |
T |
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| Q |
309 |
gaaatattatctgcttctttaactctct |
336 |
Q |
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| T |
35339891 |
gaaagattatctgcttctttaactctct |
35339918 |
T |
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