View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_10 (Length: 340)
Name: NF8865_low_10
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 334
Target Start/End: Original strand, 32343711 - 32344043
Alignment:
| Q |
2 |
acaaccaaaatgaacttcatctccatgacagtattaatctatgtgactatagtaaaacacacttcacttacacaactttatacaaatatgcaccatatac |
101 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32343711 |
acaaccaaaatgaacttcatctccatgacaatattaatctatgtgactatagtaaaacacacttcacttacaccactttatacaaatatgcaccatatac |
32343810 |
T |
|
| Q |
102 |
gcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatctnnnnnnntaaattgaaatatttaatgtccaatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
32343811 |
gcatgcatttatatagtagtttgcatgcatgagaaaatgagcactgaatattcaaatatcaaaatgtaaaaaaataaattgaaatatttaatgtccaatt |
32343910 |
T |
|
| Q |
202 |
gtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtccagctctatcacatgcatggtatgtgaaggtacat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32343911 |
gtaggggttaggtttaattgctaccacatacaccacacaatttaccttctcttaccataatagtctagctctatcacatgcatggtatgtgaaggtacat |
32344010 |
T |
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| Q |
302 |
tcgcattcatatcgaccatattgcaccaccata |
334 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
32344011 |
tcgcattcatatcgaccatattgcacccccata |
32344043 |
T |
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