View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_12 (Length: 315)
Name: NF8865_low_12
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 53096712 - 53096987
Alignment:
| Q |
27 |
tccatcgaatttggatgagcagaaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaa |
126 |
Q |
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| T |
53096712 |
tccatcgaatttggatgagcagaaatgaagggggtggaggaaattaggctacataacaaggtcaaaatgaagttgagtaaaagaaatttactgcaaacaa |
53096811 |
T |
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| Q |
127 |
gaagcattagttgcatgcgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatactttag |
226 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53096812 |
gaagcattagttgcatacgtcgagcctggcaataatgttagaccttctgttaaaacaaccaaagatgtctaggtattaaccaaatgataaaatgctttag |
53096911 |
T |
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| Q |
227 |
tcatcaaccaagtaagaaaaatcactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttctct |
302 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53096912 |
tcatcacccaagtaagaaaaatcactgcttgtaacaaccaacgagcaaaattctgtcctcacataccgttttctct |
53096987 |
T |
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