View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_18 (Length: 227)
Name: NF8865_low_18
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 50580331 - 50580530
Alignment:
| Q |
12 |
attatactacataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctt |
111 |
Q |
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| T |
50580331 |
attatactacataccttgtttgttctaaaggtggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctt |
50580430 |
T |
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| Q |
112 |
tgtaaaagaccaatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgt |
211 |
Q |
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| T |
50580431 |
tgtaaaagaccaatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgt |
50580530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 11462908 - 11462987
Alignment:
| Q |
63 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaac |
142 |
Q |
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| T |
11462908 |
tattcatgcattacccaattacttttctctcctttaggtgctcttcctttgtagaaaacaagagttttcttcattccaac |
11462987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 1059453 - 1059264
Alignment:
| Q |
22 |
ataccttgtttgttctaaagctggatttagagtgaatacggtattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagac |
121 |
Q |
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| T |
1059453 |
ataccttgttggttctaatactggatttggaatggatacggtattcatgcataacccagttggttttctctcctctaggagcccgacctttgtaaaaaac |
1059354 |
T |
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| Q |
122 |
caatgtcttcttcattccaaccaactccgatgtaacactgtcgaagatttctctgtctttccctgtggtcttccagtatccggtgtttgt |
211 |
Q |
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| T |
1059353 |
caaagtcttcttcataccaactaattctgatgtaacactgttgaaaatctccttgtctttccctgtggttttccaatatccagtgtttgt |
1059264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 45059076 - 45058993
Alignment:
| Q |
63 |
tattcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaaccaac |
146 |
Q |
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| T |
45059076 |
tattcatgcatgacccaattacttttttctcctttaggtgctcttcctttgtagaaaacaagagttttcttcataccaaccaac |
45058993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 3893451 - 3893374
Alignment:
| Q |
64 |
attcatgcatgacccaattacttttctctcctcgaggagctctgcctttgtaaaagaccaatgtcttcttcattccaa |
141 |
Q |
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| T |
3893451 |
attcatgcatgacccaatttgttttttcacctttaggagctcttcctttgtagaaaacaagtgttttcttcattccaa |
3893374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 10317623 - 10317671
Alignment:
| Q |
64 |
attcatgcatgacccaattacttttctctcctcgaggagctctgccttt |
112 |
Q |
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| T |
10317623 |
attcatgcatgacccaattggttttctctcctcttggagctctaccttt |
10317671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 91
Target Start/End: Original strand, 31606022 - 31606050
Alignment:
| Q |
63 |
tattcatgcatgacccaattacttttctc |
91 |
Q |
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| T |
31606022 |
tattcatgcatgacccaattacttttctc |
31606050 |
T |
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