View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_2 (Length: 601)
Name: NF8865_low_2
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 498; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 34 - 596
Target Start/End: Original strand, 45178714 - 45179275
Alignment:
| Q |
34 |
gaaacacagatcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattgaatacttgtctgatactgatactaatttgtt |
133 |
Q |
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| T |
45178714 |
gaaacacagatcttatttgatagaacctattaagcactaatacttgcattatctttacctattgtattgaatacttgtttgatactgatactaatttgtt |
45178813 |
T |
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| Q |
134 |
aagtacctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctc |
233 |
Q |
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| T |
45178814 |
aagtacctgcatcaatttcttttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctc |
45178913 |
T |
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| Q |
234 |
caggtcgttgcatattagcttcaaaagtttgctgcatatttttcttctaattgctgcataattgtaattatctttagtttagttagatttttattccaaa |
333 |
Q |
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| T |
45178914 |
caggtcgttgcatattagctttaaaaatttgctgcatatttttcttctaattgctgcataattgtaattatctttagtttagttagatttttattccaaa |
45179013 |
T |
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| Q |
334 |
cgttaaacatgcaacagtaaattgcaattgtgtgtgtgcgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatctt |
433 |
Q |
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| T |
45179014 |
cgttaaacatgcaacagtaaattgcaattgtgtgtgtccgcgcgcacgtgtttacacacactatgttttatgaatttataaatattatgtatcctatctt |
45179113 |
T |
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| Q |
434 |
atatttgnnnnnnntaatcatcgctatatcatattcatatccagattctggtaacacatttgtgcacaacacaatattgcaactaactttcggatatact |
533 |
Q |
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| T |
45179114 |
atatttgaaaaaaataatcatccctaaatcatattcatatccagattctggtaacacatttgtgcacaacacaatattgcaactaac-ttcggatatact |
45179212 |
T |
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| Q |
534 |
taatatttcataacttaagctaagaactactcacttgacactggatctttacttcttctcact |
596 |
Q |
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| T |
45179213 |
taatatttcataacttaagctaagaactactcacttgacactggatctttacttcttttcact |
45179275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 346
Target Start/End: Original strand, 45172007 - 45172203
Alignment:
| Q |
155 |
ttttctatctaaagtccatttcaacatacaaatctgatcaatgcctgaggcgatttgtacgcatgatatttttcatctccaggtcgttgcatattagc-t |
253 |
Q |
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| T |
45172007 |
ttttttatccaaagtccatttcaacatacaattttgttctctgcctaagactatttatatgcatga-cttttccatctacaggtcgttaaatattagctt |
45172105 |
T |
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| Q |
254 |
tcaaaagtttgctgcatatttttcttct-----aattgctgcataattgtaattatctttagtttagttagatttttattccaaacgttaaacatgca |
346 |
Q |
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| T |
45172106 |
taaaaaaattgctgcatatttttcttcttttgcaattatggcataattgtaagtatcttcagtttagtgagatttttattctaaagttcaaacatgca |
45172203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 225 - 333
Target Start/End: Original strand, 45169233 - 45169351
Alignment:
| Q |
225 |
tttcatctccaggtcgttgcatattagcttcaaaagtttgctgcatatttttcttcta-----------attgctgcataattgtaattatctttagttt |
313 |
Q |
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| T |
45169233 |
tttcatcttcaggtcgttgcctattagcttaaaaa-tttgctgcatatttttcatctttcagaaatatgattgctgcgtaattgtaattatatttatttt |
45169331 |
T |
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| Q |
314 |
agttagatttttattccaaa |
333 |
Q |
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| T |
45169332 |
agttagatttttactccaaa |
45169351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 45168922 - 45168980
Alignment:
| Q |
44 |
tcttatttgatacaacctatgaagcactaatacttgcattatctttacctattgtattg |
102 |
Q |
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| T |
45168922 |
tcttattggacagaacctatgaagcactaatatttgcattgtcttcacctattctattg |
45168980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 102
Target Start/End: Complemental strand, 24123768 - 24123723
Alignment:
| Q |
57 |
aacctatgaagcactaatacttgcattatctttacctattgtattg |
102 |
Q |
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| T |
24123768 |
aacctatgaagcactaatatttgcattgtcttcacctattgtattg |
24123723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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