View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_3 (Length: 502)
Name: NF8865_low_3
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Complemental strand, 40112652 - 40112164
Alignment:
| Q |
1 |
atacatattgcttaaagaatttaggtttccacttgtctagctaacaaacatagttgactctcaacccatcataaagttacagatttccatgaggataaaa |
100 |
Q |
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| T |
40112652 |
atacatattgcttaaagaatttaggtttccagttgtctagctaacaaacatagttgactctcaacccatcataaagttacagatttccatgaggataaaa |
40112553 |
T |
|
| Q |
101 |
aataatacagccatacaattttatattttcacatttccagccaatatagcctttgaagacacccctcccccaagttaataacaggctagtaaataaaaaa |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40112552 |
aataatacagtcatacaattttatattttcacatttccagccaatatagcctttgaacacacccctcccccaagttaataacaggctagtaaataaaaaa |
40112453 |
T |
|
| Q |
201 |
gaaaatgtctttcacaaacaaggaaagggagaaaatgtatacctcggaaagaattccacctccacagcccacatcaacaattttaagtccttcaaggggt |
300 |
Q |
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| T |
40112452 |
gaaaatgtctttcacaaacaaggaaagggagaaaatgtatacctcggaaagaattccacctccacagcccacatcaacaattttaagtccttcaaggggt |
40112353 |
T |
|
| Q |
301 |
ttagcactgtaagggtccttcctgagacgagggacatttaattattgtcctgatataccccaaagagacaatacaaatatataaaagaacctataacatt |
400 |
Q |
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| T |
40112352 |
ttagcactgtaagggtccttcctgagacgagggacatttaattattgtcctaatataccccaaagagacaatacaaatatataaaagaacctataacatt |
40112253 |
T |
|
| Q |
401 |
gttatcaattgtggttggtatatcatggcggatagccaaaaatccgttattttaagccatcatttccaccataaaacgccatggaactg |
489 |
Q |
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| T |
40112252 |
gttatcgattgtggttggtatatcatggcggatagccaaaaatccgttattttaagccatcatttccaccataaaacgccatggaactg |
40112164 |
T |
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Back To:
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 434 - 484
Target Start/End: Original strand, 17842512 - 17842561
Alignment:
| Q |
434 |
agccaaaaatccgttattttaagccatcatttccaccataaaacgccatgg |
484 |
Q |
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||||||||||||| ||| |||||| ||||||||||||||||||||||||| |
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| T |
17842512 |
agccaaaaatccgctatcttaagcg-tcatttccaccataaaacgccatgg |
17842561 |
T |
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