View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_5 (Length: 443)
Name: NF8865_low_5
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 424
Target Start/End: Original strand, 35201542 - 35201926
Alignment:
| Q |
23 |
agctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatttaattaaataatattactaatactccaaaacattt |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35201542 |
agctacacaattcaattaattaatctaccatatagtattatatcattcttaagtcttaggtcatttaattaaataatattattaatactccaaaacattt |
35201641 |
T |
|
| Q |
123 |
gaaataaaatggtaaaagatctctttcaacttaactagatgtcttagtttaaattcggtcatgtgaatgcaacagtaataacctaccaaaagagagtttc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35201642 |
gaaataaaatggtaaaagatctctttcaacttaactagatgtcttagttcgaattcggtcatgtgaatgcaacagtaataacctatcaaaagagagtttc |
35201741 |
T |
|
| Q |
223 |
gtcacttattttggttttacccggcttgagggatttatctctgcagttgcatgcagatgataatcggttgaaaaatatatattaaatgtacatatgttca |
322 |
Q |
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||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
35201742 |
gtcacttattttggttttaccaggtttgagggatctatctctgcagttgcatgcggatg------------------tatattaaatgtacatatgttca |
35201823 |
T |
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| Q |
323 |
ccttatcat-ctagctagctaggcagtctcatcactctctttgtatactccatttctaaggctatcaagcgagactcaaggcgccaactgctctttgtct |
421 |
Q |
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||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35201824 |
ccttatcatgctagctagctaggcagtctcttcactctctttgtatactacatttctaaggccatcaagcgagactcaaggcgccaactgctctttgtct |
35201923 |
T |
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