View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_7 (Length: 425)
Name: NF8865_low_7
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 45404611 - 45405003
Alignment:
| Q |
19 |
cttgttctcactttgcttcatcaactttgcaatattagcatcaaatttagtaacaagattagttcgaacggaagatcgagcttcaaagtaaacagaatta |
118 |
Q |
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| T |
45404611 |
cttgttctcactttgcttcatcaactttgcaatattagcatcaaatttagtaacaagattagttcgaacggaagatcgagcttcaaagtaaacagaatta |
45404710 |
T |
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| Q |
119 |
ttatcagaggattcagcagcaagaaaatgaagaccactccaaggactaacatctctactaagcataatcaagctcatagcaacttcttcttgctcatgtt |
218 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45404711 |
ttatcagaggattcagcagcaagataatgaagaccactccaaggactaacatctctactaagcataatcaagctcatagcaacttcttcttgctcatgtt |
45404810 |
T |
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| Q |
219 |
caacctcagaaacagaagaagaagctgttgcagtagctaccatgttataccttgttcttgttctctttgatcttttcttcctatttggagcagtgatttc |
318 |
Q |
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| T |
45404811 |
caacctcagaaacagaagaagaagctgttgcagtagctaccatgttataccttgttcttgttctctttgatcttttcttcctatttggagcagtgatttc |
45404910 |
T |
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| Q |
319 |
attatcagattgaacatctttagcattattagtccatgaatcttgatcttccaagctgttagaaactctttctttctctgaatgacacttcat |
411 |
Q |
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| T |
45404911 |
attatcagattgaacatctttagcatcattagtccatgaatcttgatcttccaagctgttagaaactctttctttctctgaatgacacttcat |
45405003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 7234334 - 7234387
Alignment:
| Q |
157 |
ccaaggactaacatctctactaagcataatcaagctcatagcaacttcttcttg |
210 |
Q |
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| T |
7234334 |
ccaaggtcttacatctctactaagcattatcaaactcatagcaacctcttcttg |
7234387 |
T |
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