View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8865_low_8 (Length: 404)
Name: NF8865_low_8
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 149 - 392
Target Start/End: Complemental strand, 36394019 - 36393776
Alignment:
| Q |
149 |
tcttcaaagtttatgtactcagaccataatgcaaccacttgattccaaatgccaatgtctagtccgtggctcaactcacgaatctgtatgaactttaaaa |
248 |
Q |
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| T |
36394019 |
tcttcaaagtttatgtactcagaccataatgcaaccacttgattgcaaatgccaatgtctagtccgtggctcaactcacgaatctgtatgaactttaaaa |
36393920 |
T |
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| Q |
249 |
tatgactagtattattctaatgtcaattatctttttcttgtcaagtttttataagacctaggatttttg-tagatatattaattgcaataaggagtgact |
347 |
Q |
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| T |
36393919 |
tatgactagtattattctaatgtcaattatctttttcttgtcaagtttttataagacctaggatttttgttagatatattaattgcaataaggagtgact |
36393820 |
T |
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| Q |
348 |
aaaaaattactcccaatgtggacaactgttacacatattcatctc |
392 |
Q |
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| T |
36393819 |
aaaaaattactcccaatgtggac-actgttacacatattcatctc |
36393776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 36394202 - 36394049
Alignment:
| Q |
1 |
aggaggtactattagaagatatgttctgaacttgacaaatcaaaatcagagttgaacattgtgtttatggtttttattcctttccacttttgcattgcat |
100 |
Q |
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| T |
36394202 |
aggaggtactattagaagatatgttctgaacttgacaaatcaaaatcagagttgaacattgtgtttatggtttttattcctttccacttttgcattgcat |
36394103 |
T |
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| Q |
101 |
gcattattgttgcttgta---gattttaatctgggttttgttggaagtgtttct |
151 |
Q |
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| T |
36394102 |
gcattattgttgcttatagatgattttaatctgggttttgttggaagtgtttct |
36394049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 392
Target Start/End: Complemental strand, 36400247 - 36400051
Alignment:
| Q |
188 |
tgattccaaatgccaatgtctagtccgtggctcaactcacgaatctgtatgaactttaaaatatgactagtattattctaatgtcaattatctttttctt |
287 |
Q |
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| T |
36400247 |
tgattacaaatgccaatatctagtt--tggctaaactcacgaatctctatgtccttttaaatatgtctattattattctaatgtcaattatctttttctt |
36400150 |
T |
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| Q |
288 |
gtcaagtttttataagacctaggatttttgtagatatattaattgcaataaggagtgactaaaaaattactcccaatgtggacaactgttacacatattc |
387 |
Q |
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| T |
36400149 |
gtcaagttcttactagacc-aagaattttatagatatattaatt---ataatgagtgactgaaaaactactcccagtgtggaaaac--ttacacatattc |
36400056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Complemental strand, 36400485 - 36400425
Alignment:
| Q |
87 |
cttttgcattgcatgcattattgttgcttgtagattttaatctgggttttgttggaagtgtt |
148 |
Q |
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| T |
36400485 |
cttttgccttgcatgcacaattgttg-ttatagattttaatctgagttttgttggatgtgtt |
36400425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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