View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8865_low_9 (Length: 354)
Name: NF8865_low_9
Description: NF8865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8865_low_9 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 317
Target Start/End: Complemental strand, 20429911 - 20429605
Alignment:
| Q |
11 |
gagtgagaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20429911 |
gagttagaagaaagagacacatacgtgtgttccatttcctctacacctgcatcacctaattattgtaacactgagaagatgacctactctttgctgttgt |
20429812 |
T |
|
| Q |
111 |
tagccatcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgataggatattttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20429811 |
tagccatcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgataggatattttt |
20429712 |
T |
|
| Q |
211 |
taaatgttctatgagcattgatggtttatagtgtgataggtgtgatagggagtctattgacatgtctgcatctatgtggtcgataaacaaacaatgcaga |
310 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20429711 |
taaatgttctatgagcattgatggtttgtggtgtgataggtgtgacagggagtctattgacatgtctgcatctatgtggtcgataaacaaacaatgcaga |
20429612 |
T |
|
| Q |
311 |
agacata |
317 |
Q |
| |
|
||||||| |
|
|
| T |
20429611 |
agacata |
20429605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 20432060 - 20432370
Alignment:
| Q |
11 |
gagtgagaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgt |
110 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| || |||||| |||| |||||||||| | || ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20432060 |
gagttagaagaaagggacacatacgtgtgtaccgtttcctttacacctgcatcacccatataatgtaacactgagaagatgacctgctctttgccgttgt |
20432159 |
T |
|
| Q |
111 |
tagccatcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgataggatattttt |
210 |
Q |
| |
|
|||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20432160 |
tagc--------taataactacttttgttgtgaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaaggtgtgataggatattttt |
20432251 |
T |
|
| Q |
211 |
taaatgttctatgagcattgatggtttatagtgtgataggtgtgatagggagtctattgacatgtctgcatctatgtggtcgataaacaaacaatgcaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |
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|
| T |
20432252 |
taaatgttctatgagcattgatggttta---------aggtttgatagggagtctattgacatgtctgtatctatctggttgataaacaaacaatgcaga |
20432342 |
T |
|
| Q |
311 |
agacatatggaaattcaacaattaaatg |
338 |
Q |
| |
|
|||| | ||||||||||||||| ||||| |
|
|
| T |
20432343 |
agacttgtggaaattcaacaatgaaatg |
20432370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 20444177 - 20443993
Alignment:
| Q |
16 |
agaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20444177 |
agaagaaagagacacatacgtgtgtaccatttcctttacacctgcatcacccaaatgttgtaacactgagaagatgacctgctctttgctgttgttagcc |
20444078 |
T |
|
| Q |
116 |
atcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgata |
200 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20444077 |
atcttaataacaactacttttgttgacaactaaagtattcactaacctatatcaaaagttatgtaacatggtttaaggtgtgata |
20443993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 20425187 - 20425372
Alignment:
| Q |
16 |
agaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||| |||||||||| || | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20425187 |
agaagaaagagacacatacgtgtgtaccgtttcctttacacctgcatcacccaaatgttgtaacactgagaagatgacctgctctttgctgttgttagcg |
20425286 |
T |
|
| Q |
116 |
atcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatag |
201 |
Q |
| |
|
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20425287 |
atcttaagaacaactacttttgttgacaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaaggtgtgatag |
20425372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 20409021 - 20408836
Alignment:
| Q |
16 |
agaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgttagcc |
115 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| |||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
20409021 |
agaagaaagagacacatatgtgtgtaccatttcctttacacctgcatcacccaaatgttgtaacactgagaagatgacctgctctttgctgttgtttgtc |
20408922 |
T |
|
| Q |
116 |
atcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatag |
201 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
20408921 |
atcttaataacaactacttttgttgacaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaaggtatgatag |
20408836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 20424506 - 20424321
Alignment:
| Q |
16 |
agaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgttagcc |
115 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| |||| || ||||||| || | || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20424506 |
agaagaaagatacacatacgtgtgtaccatttcctttacaccttcatcacccaaatgttctaacactgagaagatgacctgctctttgctgttgttagcc |
20424407 |
T |
|
| Q |
116 |
atcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatag |
201 |
Q |
| |
|
||||| | |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20424406 |
atcttaagaacaactacttttgttgacaactaaagtattcacgaaccaatatcaaaagttatgtaacatggtttaaggtgtgatag |
20424321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 20444891 - 20445076
Alignment:
| Q |
16 |
agaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgttagcc |
115 |
Q |
| |
|
||||||||||||||||||||||||| || |||||| |||| |||||||||| || || ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20444891 |
agaagaaagagacacatacgtgtgtaccgtttcctttacacctgcatcacccaaataatgtaacactgagaagatgacctgctctttgccgttgttagaa |
20444990 |
T |
|
| Q |
116 |
atcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatag |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
20444991 |
atcttgataataactacttttgttgagaactaaagtactcactaaccaataacaaaagttatgtaacatggtttaaggtgtgatag |
20445076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 201
Target Start/End: Original strand, 20409774 - 20409964
Alignment:
| Q |
11 |
gagtgagaagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgt |
110 |
Q |
| |
|
|||| |||||||||||||||||| |||| | || |||||| |||| || ||||||| || | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20409774 |
gagttagaagaaagagacacatatgtgtctaccgtttcctttacacctacatcaccgaaatgttgtaacactgagaaaatgacctgctctttgctgttgt |
20409873 |
T |
|
| Q |
111 |
tagccatcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatag |
201 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
20409874 |
tagccatcttaataacaactacttttgttgacaactaaattattccataaccaatatcaaaagttatttaacatggtttaaggtgtgatag |
20409964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 204 - 338
Target Start/End: Complemental strand, 20443222 - 20443096
Alignment:
| Q |
204 |
tattttttaaatgttctatgagcattgatggtttatagtgtgataggtgtgatagggagtctattgacatgtctgcatctatgtggtcgataaacaaaca |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
20443222 |
tattttttaaatgttctatgagcattgatggttt-ta-------aggtgtgatagggagtgtattgacatgtctgcatctatctggttgataaacaaaca |
20443131 |
T |
|
| Q |
304 |
atgcagaagacatatggaaattcaacaattaaatg |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20443130 |
atgcataagacatatggaaattcaacaattaaatg |
20443096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 204 - 338
Target Start/End: Complemental strand, 20424132 - 20423998
Alignment:
| Q |
204 |
tattttttaaatgttctatgagcattgatggtttatagtgtgataggtgtgatagggagtctattgacatgtctgcatctatgtggtcgataaacaaaca |
303 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||| || || |||||| | || |||||||||||| |
|
|
| T |
20424132 |
tattttttaaatgttctatgagcactgatagtttaaggtgtgataggtgtgatagggagtgtattgacaagtttgtatctatcttgttgataaacaaaca |
20424033 |
T |
|
| Q |
304 |
atgcagaagacatatggaaattcaacaattaaatg |
338 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |
|
|
| T |
20424032 |
atgcagaaggcatacagaaattcaacaattaaatg |
20423998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 204 - 337
Target Start/End: Complemental strand, 20408605 - 20408481
Alignment:
| Q |
204 |
tattttttaaatgttctatgagcattgatggtttatagtgtgataggtgtgatagggagtctattgacatgtctgcatctatgtggtcgataaacaaaca |
303 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||| || | |||||| | || |||||||||||| |
|
|
| T |
20408605 |
tattctttaaatgttctatgagcattgatggttta---------aggtgtgatagggagtggattgacaagtttctatctatcttgttgataaacaaaca |
20408515 |
T |
|
| Q |
304 |
atgcagaagacatatggaaattcaacaattaaat |
337 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| |
|
|
| T |
20408514 |
atgcagaaggcatatggaaattgaacaattaaat |
20408481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 5875671 - 5875860
Alignment:
| Q |
22 |
aagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgtta---gccatc |
118 |
Q |
| |
|
|||||||||||||||||| || |||||| || | |||||||| | || ||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
5875671 |
aagagacacatacgtgtgaaccgtttcctttaaacctgcatcatccaaatattgtaacactgagaagatgacatgctctttgctgttgttgtttgccatc |
5875770 |
T |
|
| Q |
119 |
ttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgataggatattt |
208 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5875771 |
ttgataacaactaattctgttgagaactaaagtattcactaaccaataacaaaagttatgtaacatggtttaaggtgtgatagggtattt |
5875860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 5881679 - 5881872
Alignment:
| Q |
21 |
aaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgctgttgt------tagc |
114 |
Q |
| |
|
||||||| |||||||||||| || |||||| || | || ||||||| || ||||| ||||||||||||| |||||||||||||||||||| | || |
|
|
| T |
5881679 |
aaagagatacatacgtgtgtaccgtttcctttagacctacatcacccaaatattgcaacactgagaagacgacctgctctttgctgttgtcgttgtttgc |
5881778 |
T |
|
| Q |
115 |
catcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgataggatattt |
208 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
5881779 |
catcttaataacaactacttttgttgagaaccaaagtaatcactaaccaatagcaaaagttatgtaacatggtttaaggtgtaatagggtattt |
5881872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 5879556 - 5879742
Alignment:
| Q |
18 |
aagaaagagacacatacgtgtgttccatttcctctacatctgcatcacctaattattgtaacactgagaagatgacctgctctttgc---tgttgttagc |
114 |
Q |
| |
|
|||||||||| |||||||| ||| | |||||| || | |||||||||| || |||||||||||||||||||| ||||||||||||| ||||||| || |
|
|
| T |
5879556 |
aagaaagagatacatacgtatgtatcgtttcctttagacctgcatcacccaaatattgtaacactgagaagataacctgctctttgctgttgttgtttgc |
5879655 |
T |
|
| Q |
115 |
catcttgataacaactacttttgttgagaactaaagtattcactaaccaatatcaaaagttatgtaacatggtttaagatgtgatagg |
202 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| |||| || ||||||| ||| ||||| |
|
|
| T |
5879656 |
cattttgataacaactacttttg-tgagaactaaagtattcactaaccaatgtcagaagttaagtaatattgtttaaggtgtcatagg |
5879742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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