View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8866_high_1 (Length: 434)
Name: NF8866_high_1
Description: NF8866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8866_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 40265341 - 40265745
Alignment:
| Q |
15 |
aaaagaaagtcatggtaattagttgaatagaatgcatgcatatattggttaactggtagcagtaatctatgttgcaacacaaagaggtgttgccatagga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40265341 |
aaaagaaagtcatggtaattagttgaatagaatgcatgcatatattggttaactggtagcagtaatctatgttgcaacacaaagaagtgttgccatagga |
40265440 |
T |
|
| Q |
115 |
aaacacaacttctgactaattacaacaacaacaagccttatccccctaagtggagtcaactatatgaatcaaattacactttaatgttaagaaaagttag |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40265441 |
aaacacgacttctgactaattacaacaacaacaagccttatccccctaagtggagtcgactatatggatcaaattacactttaatgttaagaaaagttag |
40265540 |
T |
|
| Q |
215 |
ttagagttcgtttgggggagggccgcttctacctataaactcatatttacggtttatcttatctaatgtcgaactcttaacacccccctcatatcgagaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
40265541 |
ttagagttcgtttgggggagggccgcttctacctataaactcatatttacggtttatcttatctaacgtggaactcttaacatccccctcatatcgagaa |
40265640 |
T |
|
| Q |
315 |
ctgaacatctgaagcgtgaccaaatgttctgaactcttaacagccccccattaaattttaattttgtttaacatatatatgtacatattataatccatta |
414 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40265641 |
ctgaacatctgaagcgtgaccaaatattctgaactcttaacagccccccattaaattttaattttgtttaacatatatatgtacatattataatccatta |
40265740 |
T |
|
| Q |
415 |
tttca |
419 |
Q |
| |
|
||||| |
|
|
| T |
40265741 |
tttca |
40265745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 36101777 - 36101833
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
191 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||| ||| |||||||||| |
|
|
| T |
36101777 |
acaacaacaaccaagccttatcccactaagtggggtcaactacatggatcaaattac |
36101833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 9210704 - 9210760
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
191 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| ||| ||| |||||||||| |
|
|
| T |
9210704 |
acaacaacaacgaagccttatcccactaagtggggtcagctacatggatcaaattac |
9210760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 167
Target Start/End: Original strand, 51811277 - 51811311
Alignment:
| Q |
133 |
attacaacaacaacaagccttatccccctaagtgg |
167 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
51811277 |
attacaacaacaacaagccttatcccactaagtgg |
51811311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 15665383 - 15665327
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
191 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||| ||| ||| |||||||||| |
|
|
| T |
15665383 |
acaacaacaaccaagccttatcccactaagtggggtcagctacatggatcaaattac |
15665327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 29399086 - 29399030
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattac |
191 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||| |||| ||| |||||||||||||| |
|
|
| T |
29399086 |
acaacaacaaccaagccttttcccactaagtggggtcagctacatgaatcaaattac |
29399030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 12734982 - 12734924
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattacac |
193 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| ||| |||| ||| |||||||||||| |
|
|
| T |
12734982 |
acaacaacaaccaagccttatcccactaagtggggtcgactacatggatcaaattacac |
12734924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 28960211 - 28960263
Alignment:
| Q |
136 |
acaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaa |
187 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||||||| |||| |||||||||| |
|
|
| T |
28960211 |
acaacaacaaccaagccttatcccactaaatggagtcgactacatgaatcaaa |
28960263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 45419518 - 45419450
Alignment:
| Q |
135 |
tacaacaacaac-aagccttatccccctaagtggagtcaactatatgaatcaaattacactttaatgtt |
202 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| ||| ||| ||| |||||||||||| ||||||| |
|
|
| T |
45419518 |
tacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgtt |
45419450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University