View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8866_low_2 (Length: 284)
Name: NF8866_low_2
Description: NF8866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8866_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 245
Target Start/End: Original strand, 50371520 - 50371684
Alignment:
| Q |
81 |
tagttaacataggagtatataccaaaatcaatacagaaaataagaataaatgaatgaaactgtgtagttagatcataaattcagaaaactagttgtgagg |
180 |
Q |
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| T |
50371520 |
tagttaacataggagtatataccaaaatcaatacagaaaataagaataaatgaatgaaactgtgcagttagatcataaattcagaaaactagttgtgagg |
50371619 |
T |
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| Q |
181 |
ggtttgagtaatataatatgcatgatcgaaaatccaaagttcaaatctcactgtttccattacac |
245 |
Q |
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| T |
50371620 |
ggtttgagtaatataatatgcatgatcgaaaatccaaagttcaaatcacactgtttccattacac |
50371684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50371412 - 50371497
Alignment:
| Q |
1 |
ccaattaatctaattcgtagaacatgaagagtctatgcaagaaaggagacatccaccttaactagttcctcacatagaaatagttaa |
87 |
Q |
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| T |
50371412 |
ccaattaatctcattcgtagatcatgaagagtctatgcaaggaaggtgacatcca-cttaactagttcctcacatagaaatagttaa |
50371497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 55075127 - 55075052
Alignment:
| Q |
7 |
aatctaattcgtagaacatgaagagtctatgcaagaaaggagacatccaccttaactagttcctcacatagaaatag |
83 |
Q |
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| T |
55075127 |
aatctcattcgcagaacatgaagagtctatgcaaggaaggtgacatcca-cttaactagttccccatatagaaatag |
55075052 |
T |
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