View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8867_1 (Length: 737)
Name: NF8867_1
Description: NF8867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8867_1 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 356 - 718
Target Start/End: Original strand, 1364142 - 1364506
Alignment:
| Q |
356 |
aggaaagcaaaaaagcgtccttagcatttattaaaggaagacaaattttagatggtattctggttgctaattaggtagttgatgaatctnnnnnnnnnnn |
455 |
Q |
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| T |
1364142 |
aggaaagcaaaaaagtgcccttagcatttattaaaggaatacaaattttagatggtattctggttgctaattaggtagttgatgaatctaaaaaattgaa |
1364241 |
T |
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| Q |
456 |
nnnngaattgcttttatttaaagtcgactttaagaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgact |
555 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
1364242 |
aaaagaattgcttttatttaaagtcgactttaagaaagcatacaattcagttgattggaaatatttggatgatattatggttacgatgttgtttccgact |
1364341 |
T |
|
| Q |
556 |
atttggaggaaatgaatgaaagaatgtgttgggactgctactgcggctgttttattgaatggtagtcccactgagaaatttactttagctagaggtctgc |
655 |
Q |
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| T |
1364342 |
atttggaggaaatgaatgaaaaaatgtgttgggactgctactgcgactgttttattgaatggtagtcccactgagaaattcactttagctagaggtctgc |
1364441 |
T |
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| Q |
656 |
gacaaggagatcccctttc-cccttcttgttccttctggtggttga-ggatttcatgtgatgatg |
718 |
Q |
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| T |
1364442 |
gacagggagatcccctttcacctttcttgttccttctggtggttgaggggtttcatgtgatgatg |
1364506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 179 - 346
Target Start/End: Original strand, 1363939 - 1364106
Alignment:
| Q |
179 |
ctatgattcatctccttcctagatgcttgcaagtattcttagttttaagttcgaattagaggatgtttggtttcttactaatccgcggtcaatgtttgaa |
278 |
Q |
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| T |
1363939 |
ctatgattcatctccttcatagatgcttgcaagtattcttagttttatgttcgaattaggggatgtttggtttcttactaatccgcggtcaatgtttgaa |
1364038 |
T |
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| Q |
279 |
tttctgtactaatacatccataaaaacttgatttattttgacatgtgcacaatagcaaaaaagtgtcc |
346 |
Q |
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| T |
1364039 |
tttctgtactaatacatccataaaaacttgatttgttttgacatgtggacaatagcaaaaaagtgtcc |
1364106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 1363836 - 1363942
Alignment:
| Q |
31 |
aaatcaaacgcacccattatattattttagtgttttagctatttctatctcatagtggattttcggttttgccaaaaccgaatcaattcattgtttatga |
130 |
Q |
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| T |
1363836 |
aaatcaaaggcacccattatattatttcagtgttttagctatttctatctcatagtggattttcgattttgccaaaaccgaatcaattcattgtttaaga |
1363935 |
T |
|
| Q |
131 |
gtactat |
137 |
Q |
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| ||||| |
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| T |
1363936 |
ggactat |
1363942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 510 - 617
Target Start/End: Complemental strand, 17952169 - 17952062
Alignment:
| Q |
510 |
ttggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgggactgctactgcggctgtttta |
609 |
Q |
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||||||||||||||||| |||||| | ||| ||| ||||||||| | ||||||||||||| ||||||||||||||||| || ||| ||||||| || || |
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| T |
17952169 |
ttggaaatatttggatggtgttataggtaaaatggtgtttccgaatctttggaggaaatggatgaaagaatgtgttggcacaactattgcggctattcta |
17952070 |
T |
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| Q |
610 |
ttgaatgg |
617 |
Q |
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||||||| |
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| T |
17952069 |
gtgaatgg |
17952062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 488 - 590
Target Start/End: Complemental strand, 32808966 - 32808864
Alignment:
| Q |
488 |
agaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgg |
587 |
Q |
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|||| |||||||| ||| ||||||||| |||||||||||||||||| | || ||| ||||||||| ||||| | || || || ||||||||| |||| |
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| T |
32808966 |
agaaagcatacaactcaattgattggagctatttggatgatgttatgttgaaaatggggtttccgacactttggcgtaagtggataaaagaatgtattgg |
32808867 |
T |
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| Q |
588 |
gac |
590 |
Q |
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||| |
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| T |
32808866 |
gac |
32808864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 469 - 606
Target Start/End: Original strand, 15106368 - 15106505
Alignment:
| Q |
469 |
ttatttaaagtcgactttaagaaggcatacaattcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaat |
568 |
Q |
| |
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|||||||| || |||||| | ||||||||| |||| || ||||| ||||| |||||||||| | ||| || ||| ||||||| | ||||||||||| |
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| T |
15106368 |
ttatttaaggttgactttgaaaaggcatacgattctgtagattgaaaatacttggatgatggtgtgggcaatatgccatttccgaatcattggaggaaat |
15106467 |
T |
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| Q |
569 |
gaatgaaagaatgtgttgggactgctactgcggctgtt |
606 |
Q |
| |
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| T |
15106468 |
ggatgaaagaatgtgttggcacggctaatgcggctgtt |
15106505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 584
Target Start/End: Original strand, 20691162 - 20691226
Alignment:
| Q |
520 |
ttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgt |
584 |
Q |
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|||||||| ||||||| ||| |||| |||| |||| ||||||||||||| |||||||||||||| |
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| T |
20691162 |
ttggatgacgttatgggtaaaatgtcatttctgactctttggaggaaatggatgaaagaatgtgt |
20691226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 599
Target Start/End: Complemental strand, 21580552 - 21580459
Alignment:
| Q |
506 |
ttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatgaatgaaagaatgtgttgggactgctactgc |
599 |
Q |
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|||||||||| |||||||| || |||||| | |||||| |||||||||| | ||| | ||||| || || || ||||||||||||||| |||| |
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| T |
21580552 |
ttgattggaattatttggaggaagttatgatgaagatggggtttccgactttgtggcgcaaatggattaaggagtgtgttgggactgcttctgc |
21580459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 569
Target Start/End: Original strand, 23877277 - 23877346
Alignment:
| Q |
500 |
attcagttgattggaaatatttggatgatgttatggttaagatgttgtttccgactatttggaggaaatg |
569 |
Q |
| |
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|||| ||||| |||||||||||||||||||| |||| || |||| ||||| ||| ||||||||||||| |
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| T |
23877277 |
attccgttgaatggaaatatttggatgatgtgatggagaaaatgtcttttcccactctttggaggaaatg |
23877346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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