View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8867_low_1 (Length: 334)
Name: NF8867_low_1
Description: NF8867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8867_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 18047270 - 18046967
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
18047270 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagcaagttttagagtttg |
18047171 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18047170 |
caagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
18047071 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18047070 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
18046971 |
T |
|
| Q |
318 |
tcat |
321 |
Q |
| |
|
|||| |
|
|
| T |
18046970 |
tcat |
18046967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 18033883 - 18034183
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033883 |
tcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
18033982 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18033983 |
caagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
18034082 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18034083 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaatcatctgactgaagcaaacgattgcttgcat |
18034182 |
T |
|
| Q |
318 |
t |
318 |
Q |
| |
|
| |
|
|
| T |
18034183 |
t |
18034183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 4398056 - 4398359
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4398056 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagcaagttttagagtttg |
4398155 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398156 |
caagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
4398255 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4398256 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
4398355 |
T |
|
| Q |
318 |
tcat |
321 |
Q |
| |
|
|||| |
|
|
| T |
4398356 |
tcat |
4398359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 4498586 - 4498283
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498586 |
tcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
4498487 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4498486 |
caagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
4498387 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4498386 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagaaaacgattgcttgcat |
4498287 |
T |
|
| Q |
318 |
tcat |
321 |
Q |
| |
|
|||| |
|
|
| T |
4498286 |
tcat |
4498283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 4519646 - 4519346
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519646 |
tcaaactctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
4519547 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4519546 |
caagttcagtaggctagtaatggtcggaggaagatttttaagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
4519447 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4519446 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaatcatctgactgaagcaaacgattgcttgcat |
4519347 |
T |
|
| Q |
318 |
t |
318 |
Q |
| |
|
| |
|
|
| T |
4519346 |
t |
4519346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 4529834 - 4529533
Alignment:
| Q |
18 |
tcaatctctcgcaaccatttaactcaagatgcctgagacttctattgagattttctggcaatatttcaagcttagaacaatcagaaagttttagagtttg |
117 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||| | |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4529834 |
tcaatctctcacaaccattcaactcaagatgcctaagacttttgttgagattttctggtaatatttcgagctcagaacaatcagaaagttttagagtttg |
4529735 |
T |
|
| Q |
118 |
caagttcagtaggctagtaatggtcggaggaagatttataagtacattgttccgtgatagatcaatatatcttaaatgcttcatttcttcaatactattt |
217 |
Q |
| |
|
| |||| |||||||||||||| ||| ||||||| | |||||||| | || |||||||||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
4529734 |
aaggttctgtaggctagtaatgcccggcggaagatctttaagtacaatactctttgatagatcaatatatctcagatgcttcatctcttcaatactattt |
4529635 |
T |
|
| Q |
218 |
gggatttcttcaatattcaacccacaaagtgtcaacacacgcaagaactttaagcctgagaaggaaaaaacatctgactgaagcaaacgattgcttgcat |
317 |
Q |
| |
|
|||||| | ||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||| ||| | ||||||| ||| | ||||||||||| |
|
|
| T |
4529634 |
gggattgccagaatattcaatccacaaagtgtcaacacacgtaagaactttaagcctgaaaaggaaagaacgtttgactgacgcagataattgcttgcat |
4529535 |
T |
|
| Q |
318 |
tc |
319 |
Q |
| |
|
|| |
|
|
| T |
4529534 |
tc |
4529533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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