View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8868_high_1 (Length: 553)
Name: NF8868_high_1
Description: NF8868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8868_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 24991637 - 24991090
Alignment:
| Q |
1 |
tccttcgacatgaacatttatttaca-ggtgcaaaaaataa------------agaaatagaaatccccagcattctctatcaccaaatgttggaagatg |
87 |
Q |
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| T |
24991637 |
tccttcgacataaacatttatttacagggtgcaaaaaataaagaaaaagaaatagaaatagaaatccccagcattctctatcaccaaatgttggaagatg |
24991538 |
T |
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| Q |
88 |
aacaaacttgagtacacttccacttttcttccttggccgtggtaacttgtaacacacttcacagtaagataatgctgtgtaataactgttcacaaacttt |
187 |
Q |
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| T |
24991537 |
aacaaacttgaatacacttctacttttcttccttggccgtggtaacttgtaacacacttcacagtaagataatgctgtgtaataactgttcacaaacttt |
24991438 |
T |
|
| Q |
188 |
attacatatttatatttatatgtacttctaatcaagaactcagatatcataaaactggagagtgctctctatctgaatgaagnnnnnnnngtatgtcttc |
287 |
Q |
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| T |
24991437 |
attacatatttatatttatatatacttctaatcaagaactcagatatcataaaactggagagtgctctctatctgaatgaagaaaaaaaagtatgtcttc |
24991338 |
T |
|
| Q |
288 |
tcttagagtgttagaacacatctcaatgacttcccggcaatcaaaagatcgaaggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattat |
387 |
Q |
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| T |
24991337 |
tcttagagtgtaagaacacatctcaatgacttcccggcaatcaaaagattgaaggcttggtttatctcatcaaagggaagctcgtgagtgatgaaattat |
24991238 |
T |
|
| Q |
388 |
ccagctttatcacctaaaaataatagaagaatataattatttgcacattaaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttaccc |
487 |
Q |
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| T |
24991237 |
ccaactttatcgcctaaaaataatagaagaatataattatttgcacattaaaatgcgtcgcataatttgagtttttgcaagtagtgatgatcatttaccc |
24991138 |
T |
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| Q |
488 |
ctttcatgcattctgtggcaagattaggcaattgacttttgcctttga |
535 |
Q |
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| T |
24991137 |
ctttcatgcattctgtggcaagattaggcaattgacttttgcctttga |
24991090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 140 - 535
Target Start/End: Complemental strand, 24995151 - 24994763
Alignment:
| Q |
140 |
cacacttcacagtaagataatgctgtgtaataactgttcacaaactttatta--catatttatatttatatgtacttctaatcaagaactcagatatcat |
237 |
Q |
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||||||||||||||||||||||| | |||| |||||||| ||| ||||| |||||||||||||| || |||||||| | ||||| ||||||||||| |
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| T |
24995151 |
cacacttcacagtaagataatgccgcgtaagtactgttcaagaacactattatacatatttatatttagatatacttctagtaaagaattcagatatcat |
24995052 |
T |
|
| Q |
238 |
aaaactggagagtgctctctatctgaatgaagnnnnnnnngtatgtcttctcttagagtgttagaacacatctcaatgacttcccggcaatcaaaagatc |
337 |
Q |
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| T |
24995051 |
aatacttgagagtgctctctatctaaatgaaaaagcagc-----gtcttctcttagagtgtcagaagacatctcagtgacttcccggcaatcaaaagatc |
24994957 |
T |
|
| Q |
338 |
gaaggcttggtttatctcgtcaaagggaagctcgtgagtgatgaaattatccagctttatcacctaaaaataatagaagaatataattatttgcacatta |
437 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| ||| ||| || |
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| T |
24994956 |
gaaggctttgtttatctcgtcaaagggaagttcgtgagtgatgaaatcatccaactttatcgcctaaaaataatagaagaatataattacttggacacta |
24994857 |
T |
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| Q |
438 |
aaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttga |
535 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24994856 |
aaacgcatcgcataatttgagtttttgc---tagtgatgatca-ttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttga |
24994763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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