View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8868_high_4 (Length: 333)
Name: NF8868_high_4
Description: NF8868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8868_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 8397570 - 8397269
Alignment:
| Q |
17 |
catatgtatgcattaaccacttcatggcacatataaagaaaattagtcacaatattactaatataccaagataattatttataaaacatataattaaaat |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8397570 |
catacgtatgcattaaccacttcatggcacatataaagaaaattagtcgcaatattactaatataccaagataattatttataaaacacataattaaaat |
8397471 |
T |
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| Q |
117 |
aggatgaaaagaagttcaaatatatctatgcaaacaattattattttttaatgcacacaaatttggatgaaaaagtttttgtttgaaaggagagaatgtt |
216 |
Q |
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| T |
8397470 |
aggatgaaaagaagttcaaatatatctatgcaaacaattattattttttaatgcacacaaatgtggatgaaaaagtttttgtttgaa--gagagaatgtt |
8397373 |
T |
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| Q |
217 |
gatgtgtcaagtgtgatttgaatcgaagagtagatgttgagcaacatatcactggaaaaatttatataccaaatgcctaaatattgagtgaagatgtgat |
316 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
8397372 |
gatgtgtcaagtgtgatttaaattgaagagtagatgttgagcaacatatcacttggaaaatttatataccaaatacctaaatattga-tgaagatgtgat |
8397274 |
T |
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| Q |
317 |
gtcca |
321 |
Q |
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||||| |
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| T |
8397273 |
gtcca |
8397269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 13886463 - 13886514
Alignment:
| Q |
63 |
tcacaatattactaatataccaagataattatttataaaacatataattaaa |
114 |
Q |
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| T |
13886463 |
tcacaatattactaagataccaagataattatttataaaataaataattaaa |
13886514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 12383403 - 12383345
Alignment:
| Q |
44 |
cacatataaagaaaattagtcacaatattactaatataccaagataattatttataaaa |
102 |
Q |
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||||||||| ||||| || ||||||||||||||| | ||| ||||||||||||||||| |
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| T |
12383403 |
cacatataaggaaaaataatcacaatattactaagacaccgggataattatttataaaa |
12383345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 15737414 - 15737370
Alignment:
| Q |
70 |
attactaatataccaagataattatttataaaacatataattaaa |
114 |
Q |
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|||||||| | |||||||||||||||||||||| | ||||||||| |
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| T |
15737414 |
attactaagacaccaagataattatttataaaataaataattaaa |
15737370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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